Gene detail

Detailed information of gene27371.t1 in Actinoscyphia liui

Genomic Location: chr8:22154102...22161945
NR annotation: CAC5376916.1, EIF5A [Mytilus coruscus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene27371.t1

ATGAGAATAACGAGAGGGAATGGGTGTGCGAAGCAGTTCTGCCTCTTTCACAAACCACGTTGCCTGGAACTAAGCCCTGCTATCATGATTGAAGACAGTGATTTTGGAGGAGGAAATGCTGGAGCTTCAGAAACCTATCCAGCCCAGGCTTCTACTTTGCGTAAAAATGGTTATGTCCTCCTCAAAAATCGTCCTTGCAAAATTGTTGAAATGTCCACATCCAAAACTGGAAAACATGGACACGCCAAGGTGCATTTCGTAGGACTTGATATTTTTACTGGAAAAAAGTATGAAGATCTTTGCCCATCCACCCACAACATGAATGTACCAAACGTGCTTCGCAAAGATTATCAGTTGAATGATATCGATACTGATGGCTTCATGTCATTAATGGATGACAACGGTGAACAAAAAGAAGACGTCAAAGTCCCTGACACCGATATAGGAAAAGAGATTGCCGACAAACACACAAAGGGCGAGCAAATTAATGTTACTATATTGACAGCTATGGGTGAGGAAGCCGCTGTAGGCACGAAGGTGTCCACTACCTAGAGAACATTCAATTACCAACAGTTAAATGGTCATACAAACCAGCCCATGGAAATAAATGGGTTTTAAAACTAGCTTGAATATTATTATATCAACTCACTTGCCTAGAAAAATCTTATGCAATAAATTGTTTACTGTTGTTGCTTGCTTGTTTGTCTGGTGTCTGACGTGCTAGCAGACCATAAACCCATGAAACAAATACAATTGAACTTCTATTAAGTGTCTCAGGGCCTTCTTTTCGAAAGCCCCAAAAACTTTATAGCCATTCAAGAAATCTGAAACACTTAGGCTGTGTTTAGACTAGAGCGTTTACTTAGGTTGAGTTATATTTTGCTTGACTGGGATTGGTTAGGTTACTCTTCAGTTGAACGCTCTAGTCTAAACATGGCCTTAGTTTGCAGAAGTGTTCTTTTCACATGTTTTTAATATGAACAAACTTAAGTCTCCCTTCTAAACTACTTTATTTTGAAGATACAGATTTTTAAAGAAAGGCTTTTCAACCCGAAACGTTTTCAGAGCTTTCGAGAAACGGGCCCCAATAATCAATCCCTAAGTTTTACCGAACTTTTTCTCTGTGTGTGCAATAGGACATTTGCACGATGGTGTCATTTGACTACAACTACCAGAATGCTTTACGAATTTTCTTTCTTATTCAAATTTGTATTCCCTTGTGAGAATAGAAGAACAATTGCCACTAATTATCTTACAAAAGAAAATGGGCAAAGCATTCTGGTAGTTGTAGTCAAATGACGCCATCATGCAAATGTCCTATTGCTTGTGCAACTTGTCTTGCAACGATTAATGTTACACTGTCGGTTGTTTGTGCAATTTTATTTGCAACGCCATTACGAGACAACATGGGATTTACAAAAGTGTTTGTGATAAATACTTTAAAGTGCTCTATTAGAGTGCAGACAATATAACCGTGAAAAAGTAGTAACTAACTGGTGATAAATATCACTAATAAACAGTATAGTTTTTGACTTGAATACAGAGTTTTGCGCGTTCTGATTGGTCGAGAGGCTCCGACTACGAGATATAGACACTGGCAGAGCAGTGACTGAGTTTTGCTAACTTTCAAAATGGCTGCCAGCAGTCGTTTTGCTCAAAGTTCTTATGAAGATATGTCTTGTCTGATATTGAAGTCTAAAATTATACTAAAGCAATTAGTCATCTCGACTTCGGTGACTACTTGTTAGATAGAAAACAAAGGATTTTGCACCATTTAGTGCTATTTAGGGTGTGTTCGATTGACCCTATTCTGGAATAATACACAAAATAATCACTTGAAATCGTTCACTAAGCAGAATTTAACATTCCAAACTATTTCAATACCTTTATAAGAATAAACCAAGGAGTCTTGCTTTTTCAGTGGAGAACAGCTGCTTTGCAGCGATTTAGGGATGCTATTCCATGTATTCTCATTCTAGAATACGGCCAATCGAACGGACCCTTAATTAGTCAAATCTTTCATGGTTGTATGAGGGGGACATAAGGGTATACAGTTTTACGGTTTTGGGCTATTTTACTGGCGGTTTTTCGGATAACATATTTTAATGCGGTTTTGTGGATTCGTCCAAGCATGCGGATTCAAATTTCTTTCGAATTTCGTTGCAATATTGCGGTTTCTTGCGATTTTGTTTTGCGGTTTTGGGCACCTCTTCATGCCCCCCTCTTATATTGTC

Protein

Uniprot

Uniprot term	Description
Q6NX89	Eukaryotic translation initiation factor 5A-1 OS=Danio rerio OX=7955 GN=eif5a PE=1 SV=1
Q7ZXG3	Eukaryotic translation initiation factor 5A-1 OS=Xenopus laevis OX=8355 GN=eif5a.L PE=1 SV=1
P10160	Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus OX=9986 GN=EIF5A PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01287	eIF-5a	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	Domain	Interproscan
PF21485	IF5A-like_N	Translation initiation factor 5A-like, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR001884	Family	Translation elongation factor IF5A-like	Interproscan
IPR019769	PTM	Translation elongation factor, IF5A, hypusine site	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR020189	Domain	Translation elongation factor, IF5A C-terminal	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR048670	Domain	Translation initiation factor 5A-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045901	Biological Process	positive regulation of translational elongation	Interproscan
GO:0045905	Biological Process	positive regulation of translational termination	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03263	EIF5A; translation initiation factor 5A	-	Translation factors	ko03012	deepkoala