Gene detail

Detailed information of gene27279.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene27279.t1	SKI ONCOGENE-RELATED	chr8	20589395	20592853	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene27279.t1

ATGGAAAAGGATAAGTTCCAGAGGACCGAGAACCCTCTACTCGATGAAATCCTTCAAAAGTATCGAGACTGTTCGACGGATTCCATCTCTGGGCCCAAAGGATTTGGTGAACATCTTGGCAAAAAGCCGTGGACCATATCGTCAGACATGAAAGGGAAGCAGACTTTTGTTTCGTCTGGAGAATCGGTGAAGACCGCACGGAATCAGTCAGTGCTCCGTTCGGTCGCCACGAGAATGCACGTAACGGCGAAAGACCAGGGTACTCTGAAGTTTAAGGAAACTCTAGTGGATCAAATTCCATTGGCATGCTTCAGCTATGGCGGAGAGAAGCGATTGTGCTTTAAAGATTTGGTCGAGAAAGTCCTGAAGGGATTCACCACTCAGGCAATTAACAGCGCACGCGATACATTGCAGATTTTTTGTCCTCGATGTACACCACAACAATTGGAGATTCTCAAGTTGGCCGGAGTATTGCCTTGGTCGTGCACTTCTGCTGGTCTTATCACCAAGAGTGATTCCTTTCGATTGATTGGTGCTCTCACATGCTCCTCGTTCCCGCGCAGAAACAGTCGAATATTTTCAGTCGAAAGTCTCGAGGTCTACCACGAGTGTTTTGGTGGTTGTGTAGGGACCTTGGAAATCGAGTCGTACACTGATCCTTACGCCGAGTGTGTTACTTGCTCACAGTGTGACGGGGTATTCTCACCAAGGACATTTATAACTCACACTCATAGCTCTGGTGAGGTACATTCATGTCACTGGGGATTCGATAGTGCTCATTGGAGATTATATTTAATGCTATGCAATGATCATCCGACGTTACATGTGCAGATGTTGTGGGAGATGTTGACTAGTAAATTCACCGAGGGAAACAATCGACGGAGATTTAAACGCGAGTACGAGCCTGAAAACAGTGATGCAGATTACAGCTATAATTCCAAGGAATCGAGGACAAGTCCAAGCTTTTCTGGAAAAAAGCTGCGATCTGAAAGTCGAGATGGAAGTGTCAGCCCCAAGCACAAAGAACCGGAGGAACGATACGTTTATTGCTCAAACGGAGTTGTAACTTCGTGTGCAAACGGGGGGGACATCATCTGTAGGCGCTCTGCATTCAGACCCTGGTCTCCGAATGGGAATCCGAGACAAAATGGAAAAGCAGTCGAGAAAGGAATTGCTGGTTCCATGTCTACAATCCCCCCCGGTTCACCTGCTCGAATTTTTACACCTTCCACGAACCCGTCCATGAACACTGACGTCTGTAACTGTGCAAGCCCATCTTGCTCTCACCGTGCACAAAAGTTCTTCAGGAATTGTAGTCCCAAATCTACGTCCCCGTCGCAGACGTCGCAGACGTCGCAGACGTCGCAGACGTCGCAGAAATTATCGGAGACCATCTCGACACCTACATCTAGGGATCCCATGTCTTTAGAAAAAACAGCTAAAGATATGTTGGACGTTGTAAACCGTGACAACCACGGATGGAGCTCGTTCGAAGAAGCGTATTGCCACTTGCAAAATGGTATGAAAGTTGGACTGAACTCTGGGAAAATATCTATTTCAGAAGAGGATATTTACCAAACTCTTCTTCGACATTCGAGTAACGGAGACGGAGATCTACCCAATATGAAAGAACTCAGCTCGAATTTAGCCAAAGATTTGAAGGAAATTCTGTCACACAACGAAAAGAAATTAAAATTACTTTGCGCAGAGAAGGTCAAAGTAGAAGATGCGTTGGCGACTACAAAACGAGAAAATGCGAGCAGGGTCGAAGAATTGTACGACGATTTGAGAAAATCGAAAAAAGACTTGCGACTCTGTCAGGCAAGATACAGAGATGAAACTCATGAACTGAAAAACAGAATTAACAGTCTGGAAGCTGAGCTGAGGCGGCAGAAGTTCGACAAAGAAGGAAGCGCAGGTTGTGGCAGCTCGAAGGAGTCGCTCGAAGTCCTTCAACAAGAAGTAAGAGACATGAGTGTTAAACTTGAACAAAAGGATAGTTTTTGTAGAGAACTTGAAAGCGAACTAAGCTCACTCCACGCCTGGATAAAAGCTCAAACTTATCATCCAACATCCACGATTTTGTACGGTTATCGACCTCATCAACCAGAGCCTCGAACTGTTATTCAAAGTGTGCAGTTCGTGAATGGAAATTCCGAGAAATCGACCCCCAAATCGAATGGACACTTACGACGTGATAGCTCAGAGGAAGACGTATAA

Transcript

gene27279.t1

ATCTACAGCTGTCTGCCGTGAGCTGGCTACGGTGTTGCTTATCCAGTAAACTGACGATGGAAAAGGATAAGTTCCAGAGGACCGAGAACCCTCTACTCGATGAAATCCTTCAAAAGTATCGAGACTGTTCGACGGATTCCATCTCTGGGCCCAAAGGATTTGGTGAACATCTTGGCAAAAAGCCGTGGACCATATCGTCAGACATGAAAGGGAAGCAGACTTTTGTTTCGTCTGGAGAATCGGTGAAGACCGCACGGAATCAGTCAGTGCTCCGTTCGGTCGCCACGAGAATGCACGTAACGGCGAAAGACCAGGGTACTCTGAAGTTTAAGGAAACTCTAGTGGATCAAATTCCATTGGCATGCTTCAGCTATGGCGGAGAGAAGCGATTGTGCTTTAAAGATTTGGTCGAGAAAGTCCTGAAGGGATTCACCACTCAGGCAATTAACAGCGCACGCGATACATTGCAGATTTTTTGTCCTCGATGTACACCACAACAATTGGAGATTCTCAAGTTGGCCGGAGTATTGCCTTGGTCGTGCACTTCTGCTGGTCTTATCACCAAGAGTGATTCCTTTCGATTGATTGGTGCTCTCACATGCTCCTCGTTCCCGCGCAGAAACAGTCGAATATTTTCAGTCGAAAGTCTCGAGGTCTACCACGAGTGTTTTGGTGGTTGTGTAGGGACCTTGGAAATCGAGTCGTACACTGATCCTTACGCCGAGTGTGTTACTTGCTCACAGTGTGACGGGGTATTCTCACCAAGGACATTTATAACTCACACTCATAGCTCTGGTGAGGTACATTCATGTCACTGGGGATTCGATAGTGCTCATTGGAGATTATATTTAATGCTATGCAATGATCATCCGACGTTACATGTGCAGATGTTGTGGGAGATGTTGACTAGTAAATTCACCGAGGGAAACAATCGACGGAGATTTAAACGCGAGTACGAGCCTGAAAACAGTGATGCAGATTACAGCTATAATTCCAAGGAATCGAGGACAAGTCCAAGCTTTTCTGGAAAAAAGCTGCGATCTGAAAGTCGAGATGGAAGTGTCAGCCCCAAGCACAAAGAACCGGAGGAACGATACGTTTATTGCTCAAACGGAGTTGTAACTTCGTGTGCAAACGGGGGGGACATCATCTGTAGGCGCTCTGCATTCAGACCCTGGTCTCCGAATGGGAATCCGAGACAAAATGGAAAAGCAGTCGAGAAAGGAATTGCTGGTTCCATGTCTACAATCCCCCCCGGTTCACCTGCTCGAATTTTTACACCTTCCACGAACCCGTCCATGAACACTGACGTCTGTAACTGTGCAAGCCCATCTTGCTCTCACCGTGCACAAAAGTTCTTCAGGAATTGTAGTCCCAAATCTACGTCCCCGTCGCAGACGTCGCAGACGTCGCAGACGTCGCAGACGTCGCAGAAATTATCGGAGACCATCTCGACACCTACATCTAGGGATCCCATGTCTTTAGAAAAAACAGCTAAAGATATGTTGGACGTTGTAAACCGTGACAACCACGGATGGAGCTCGTTCGAAGAAGCGTATTGCCACTTGCAAAATGGTATGAAAGTTGGACTGAACTCTGGGAAAATATCTATTTCAGAAGAGGATATTTACCAAACTCTTCTTCGACATTCGAGTAACGGAGACGGAGATCTACCCAATATGAAAGAACTCAGCTCGAATTTAGCCAAAGATTTGAAGGAAATTCTGTCACACAACGAAAAGAAATTAAAATTACTTTGCGCAGAGAAGGTCAAAGTAGAAGATGCGTTGGCGACTACAAAACGAGAAAATGCGAGCAGGGTCGAAGAATTGTACGACGATTTGAGAAAATCGAAAAAAGACTTGCGACTCTGTCAGGCAAGATACAGAGATGAAACTCATGAACTGAAAAACAGAATTAACAGTCTGGAAGCTGAGCTGAGGCGGCAGAAGTTCGACAAAGAAGGAAGCGCAGGTTGTGGCAGCTCGAAGGAGTCGCTCGAAGTCCTTCAACAAGAAGTAAGAGACATGAGTGTTAAACTTGAACAAAAGGATAGTTTTTGTAGAGAACTTGAAAGCGAACTAAGCTCACTCCACGCCTGGATAAAAGCTCAAACTTATCATCCAACATCCACGATTTTGTACGGTTATCGACCTCATCAACCAGAGCCTCGAACTGTTATTCAAAGTGTGCAGTTCGTGAATGGAAATTCCGAGAAATCGACCCCCAAATCGAATGGACACTTACGACGTGATAGCTCAGAGGAAGACGTATAAAGTACATGCTAAAACCTACATGTAAATATTATTTTTTATAAGATTAGATATTTGCACAATAATTATAAGTTTAGCTACGCGCGCGCGTGTTTTGAATAGTTTAAAATGTGCTGCGAAACTAACAATTTCTATAATTTCCACGTCCGAGGAAAAAGCTGGAGCTGAAGTATTGTTATATGGTTTTATAGAAGCGCTTTCTTCAAAGGCTATCAAGGATGTTTTGAAATGTGTAGGAGACATAATATCCCCCTTTCGTGGTTGGTGTAGCTGTTTCCATTATGCGTAGACAAAACATCGAAACCAACCGAAGAGATTGTCTTGTGCGGATTGGCACGAATGGTGTAGCAGACCAATCTATTAGGATTTCATAATACTAGTGAATGAATGTTTTCCCATTTCAATACTATTGGGAATTCGAGTCTTTGTTTAAAATTCTCCCATTAAAAAAGACACGAAAGTCGGCATCTTATTTCAAACCTATTGAGATGAAATAATTTTGAGAGAAGGCCAGCCAAAGAGACCAAATTATTAGGATTTAATAATGCTACTGAATGAGTGTTTTCCCATTTCAATCCTCTTGGGAATTCGAGTCTGTTTAAAATTCTTCCATTAAAAAAAGACACCAAAGCCATCTTATTTTCAAACCTCAGGAAGATAGAGATGCAATAATTTTGAGAGAAGCAATTAGGGTTTATCCCATCAAAAACTGAGCTAATTATGCAGTGAGCAAATTCTCTTGAAAGTTAACATTTTAACTCAATATTTGATTATTTTCCCGCCGTTCGGTGACACGGGTCTAAGCAATGGCTCAAGTTGAAGGCCCCCCAACAAGTGAGAAATAACATCATCACAAATAGTTTCAAATAAATAAGTTGCTTATTATGTATAAACATATTTACTTAATATTATACAAATTCTCGTTGGTGGAGATTAGATACGAGATTAAATTTGTGGAAGATGAGTTTTTTTAACTCGTGTAATGCGAAATTTTCGACTTCAGTTGATAAAATAGTCTTTAGTTCAGACAAAACCGACAAAGCCACAAAAATAAATACCAACTAGACTGATTATAAATATTTGTATGTCTACTTCCTACTTATATTTCGTGGTCTACACGTTAAACTATTTATTAGAAGCTTTAAAAGCATACGGAGAAAGTTGTTATTTAGAAAATAAAGAGTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02437	Ski_Sno	SKI/SNO/DAC family	Family	Interproscan
PF08782	c-SKI_SMAD_bind	c-SKI Smad4 binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003380	Domain	SKI/SNO/DAC domain	Interproscan
IPR009061	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR010919	Homologous_superfamily	SAND-like domain superfamily	Interproscan
IPR014890	Domain	c-SKI SMAD4-binding domain	Interproscan
IPR023216	Family	Transcription regulator SKI/SnoN	Interproscan
IPR037000	Homologous_superfamily	Ski-like, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10005	SKI ONCOGENE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0030514	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0046332	Molecular Function	SMAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-