Gene detail

Detailed information of gene27201.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene27201.t1	PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER	chr8	19418636	19438381	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene27201.t1

Transcript

gene27201.t1

ATGTCCGCGAAAATCCTCCTGTTTTCTTGTGGCATCTTGGTCTCTCTCCTCTCACAAGCAACGTCCCAAACTCAGACGTTCTCCCGAAATCCTGAAGATCTTGAGTTGCTGGTTTTAACGATAGCAACCGAGGAAACAGATGGGTATAAGAGGTTTATGAGATCATGCAAGCACTACAATATCTCAGTGCGGGTGATTGGTATGAACGAAGAGTGGAAAGGTGGCGACATCCAGCACAATCCAGGGGGTGGCCAAAAGATCAATATGCTGAAAAAAATCACTGGTGAATACAAAGAGAAAAAGAATTTATTACTCATGTTTTCAGACAGCTATGATGTCATATTTCTTTCAAGACCCGAGGAATTCATCAAGACATTTTTAAAGTTCAATGCAAACATGATTTTTTCGGCAGAAGGATTTTGCTGGCCAGACAGATGGCTTGTGGATAAGTACCCAGAAATTGGACATGGTAAACGATTCTTATGCTCTGGAGGATTCATTGGCTATGCACCAGTATTCCATAATGTTGTTACACATAAAGAGATTAAGGACGAGGAAGATGACCAACTCTACTATACAAACATCTACCTCAATGAGAAAACAAGGGAGAATTTCAGCATAGTACTTGACCACACGGCACAGATCTTTCAAAATCTTAACGGAGCACAAGAGGAAGTGACGTTGGAGTTTGTGGGTACCGAAGTCACTGTTAATAACACTGCCCATTCCACGACACCATTATGGATCCATGGCAATGGTCCAAGCAAGCTTTATCTCAATTACCTTGGCAACTACGTCCCTGCGGCCTGGAACTCTGAAGAAGGTTGCGTCAGTTGTAAAGAAGATGTTATCGACCTGAAGATAATTAAGGATCAACACCTTCCTCGAGTGATGTTGGCTATTATTATTGCTCAACCTACTCCATTTATGCCAGAGTTCTTTAAAAGAATCGAAGCCATTGATTACCCGAAGAAACTCATTGACTTGTACATCCATAACTTGGCCGATTACCATAGCAACCATGTCGCTGAATGGCTCAAGGGCGCTGCTAAAGGCCTCTATAAAACTGTCACAAACCTTGGACCAGGAGACAAGGAATTTCAAGCAAGGAACAAGATGGTGGAGGCTGGCATCCAAACCGGAAGTGACTATCTCTTCTTCGTTAATTCTGACGTCTCGTATACCAACGAAGACGTCTTGAAGGTCTTGATTTCCCAAAACAGACCTTTTATCGTCCCGAAATTGTCCAGATACAAGAAATTATGGTCCAACTTTTGGGGCGCCATCGGAGACGATGGTTATTATGCAAGATCGGACGATTACATAGATATCGTTCAGTATGACCGAATGGGGATATGGAACTCGCCTTATGTCTGTAGTTCATTTTTGATCAAGAAAGAAGTTCTGCCCAAAATACGACACAGTCATGGTCATGGAAAGTTTGACCCAGACATGGCATTCTCTAAACATATCAGAGATAAGGGAATTTTCATGCATGTTCTCAATACGCACTACTTTGGGAACCTTAAAGATTTCGACAACTATACTACTACCTACTTGCACAACGACTTGTGGCAGATCTTTGATAACGAGGCTGACTGGAGAGATAAGTATATTCATGAAAATTATTCACGAAACTTAAACGAAAGCATCCCTATTGATATGCCCTGTCCTGACGTCTTCTGGTTTCCACTCGTCACTGAAACCTGGGCAAAACATATGATCGAGGAGATGGAGCACTATGGTCAGTGGTCTGGCGGTAAAAACAAAGACGGACGTCTAACTGGTGGTTACGAGAACGTCCCCACAGTGGACATCCACATGAACCAGATTGGTTACGAAAGGGAATGGCTACATTTTCTCAAGCTGTACGTTGTCCCTGTAAATACTCGTATTTTCCCGGGATACTACTCAGATGGCCGTGCAGTAATGAACTTCGTAGTGAAATACACCACTGCAGGACAGTACTATCTTCGACCTCACCACGATTCCTCAACATACACCATCAACATAGGACTGAATCAACCGGGAGTCGATTATGGCGGCGGTGGCTCACGATTTATCCGCCAAAACTGTGCTGTCTCAGACACTCTCGTCGGTTGGTCCATTATGCACCCAGGGCGACTAACACACTACCACGAAGGATTACCAACAACCTGGGGTACACGATACATCATGGTGTGCTTCATCGATCCCTGAGCAAACAGTCCCTACATTAAGTCAAACTAAAACTTATTTTACAAAATGATATTTTTATATACAGCTGTTGCAAAATGGTTGACGTTTATAAACTTTCCTTTTGAGCTCGCAGTGTGTTATGGGAAGTTGGATTAAGGTAAAGTGAATACGATATGTATTGTCACAGGTTTCACATTAATACTGGCAGGACTTAAGAAAAAGAAATAAAATAATAATAAAAATCATCCAGGAAGTATAACGTTGTAGAGTTTTTGTTTCGCTTTTAATGTGACCAAATCGTATTCAAATTAGTGTATTACTGGCGGCCATCTTGAATTCGAATCAAGCCTTTACATGCAAGTGAGGCTATGACGTAATTTGCTGTGAAATGACACCAGAAAGTTTGTTTGGGCTTTTTGTGACAGAAAGGACTTTGACCTTTGCCTTTGACGTTGCCTTTGACCTCTGAAACTTTGCAAGGATGGACAAAAGATTATCAAGAAATATAATTTGAAAGTAAAATACAGATTTTATTGCAAAAAGGATAATAAACCTAATTAAAAAAAAAGTGATGATTATGTCATGATGGTTTTCATTATGATTTATAAGCTTTGCTACATTGGTGGGGTGCCCCAGAGGGTCCCTATTGCGGTACACTGGGAAAAATCTATAAAACACATGAATGCTTTTTCCGAACTATTCCCATTCGAATATGACAAAAACTATTCATGTGTTTTATAACTTTTTACATGTGTGAGAAAGAAGACAGGCCAACAGGAAATCCATGCCTTACTCTCTTACTCAAACTGAGTTATGTGGGTTCTTTTATGTCCCTCCAGGGTTAATGTGTAGGCACGGGGAAAAAATCTAAAACACATGAATGGTTTTTGTCATATTCGAATGAGAATCATTCGGAAATAACATTCATGTGTTTTATAAACATTTCCCCTGTGAGTGTGGAGAGACGGGGCCTACAGTTAATGTCCTTATCCGAGAAGATATGAAGGTCTAACCATTTGCAGATGAGTTACAAAGGCGCATTTCCTGAGTCGGTATTTCTTGTAGTAACTTTGATCTGGAAGAAACTATCACAGGGAAACATTTATAAAATCCATGAATGGTTTTTGTCATATTCCCATTTGGAATCAAAGGGACATCCGAACTATTTCCATAGTTGGTTTTGGAATAAATGGGAAAAAAGAACTATTCCCATTGATGGTTTTGGAATCATTGGGAAAAACGAACTATTCCCATTGATGGTTTTTGGAATAAATGGGAAAAACGAACTATTCCCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03171	2OG-FeII_Oxy	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR006620	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR044861	Domain	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR050757	Family	Collagen-modifying Glycosyltransferase 25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10730	PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0008475	Molecular Function	procollagen-lysine 5-dioxygenase activity	Interproscan
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0017185	Biological Process	peptidyl-lysine hydroxylation	Interproscan
GO:0031418	Molecular Function	L-ascorbic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-