Gene detail

Detailed information of gene27081.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene27081.t1	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	chr8	17300837	17311887	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene27081.t1

ATGGCGGCCGTTTGTGGAGCTCGAAGTTTACGCTCGCTACAAATTAGGCCAGCAATGGCTCTAATGAAGTTTCAGACAAGAGATTCAACATCTGCAGCAGCAGCAGAACAACCCAGAAACAAAACCTTTTCTATTTATCGCTGGAACCCTGATAAACCTGGAGACAAGCCAAAGATGCAGGAGTATCAAGTGGACTTGAACAGTTGTGGCCCTATGATACTTGATGCTCTTATCAAGATCAAGAATGAAATTGATCCAACCCTTACCTTCAGACGGTCATGCCGAGAAGGAATATGTGGTTCATGTTCCATGAATATTGGTGGCGAGAATACCTTGGCGTGCATTAGTCGCATAGACCAGCGTACTGATAAAAAGACCAAGATTTACCCACTGCCACACATGTACGTTGTCAAAGACTTAGTTCCAGACATGCAAAACTTCTATGATCAGTACACATCTATTCAGCCTTACCTAATGAAGAATGGTGAAGTCGAGTATGGAAAGGAACAGTACTATCAGTCTATCGAAGACAGAAAAAAGCTAGATGGCTTGTATGAATGCATTATGTGTGCATGCTGTAGTACATCGTGTCCTAGTTACTGGTGGAATGGTGATAAGTACCTTGGACCAGCTGTACTTCAACAGGCTTATCGATGGATCATTGATAGCAGGGACGATTTAAGAGATGAGCGACTAGCACAGCTAGATACTGATAACTACAAGATCTACAGATGCCATACCATCATGAACTGTACGAAATCCTGTCCTAAGGGTCTAAACCCAGGCTGGGCGATAGGAGAGCTGAAGAAGATGTTAGCAGCCCGCAAAGACACCAAATCAGAAGCATCAGCGTAGTTGAATTCATGAAATGATTCCTTTCTTTGAAAAATTCTTAATTGAAAGATATACAGAAAAACTTTTCCAGTTTTCTGGAAATATGTGCATAAAACTGCAAAACAGTTCAAATCAAGGAGTGTCTTGTGTTTGATTGACCCTATTCCGGAATAGGAATACACGAAATCATCACATTCCAAACTGTTTCAGTACCTTTATTAGAATAAACCAAAGAGTCTTTTGCTTTTTCAGTGGAGAACAGCTGCTTTGCAGCGATTTAGTGATGCTATTCCATGTATTCTCATTCTAGAATACGGTCAATCGAACGCACCCTTAGTCAAATTTAGCAGTTTTTTTTTTCAAAAACCGTTGATAAAGGGAGAAGATTTGACAGCTATACCCACAATTCATAGTGGATAAATTAATTGGATAACAGCAGGATTTATCCACTGGATAAGGATTTACCCAACGGATAGCGCTATCCACCCTTCCTGCAACCCGGGTCAGATTTCTTGTGCTTTTTTTGTGTGCGTTTTTTTTTTTCAATAGGTGCATACCAGAGTTATACTTTAAAGAATGCTTTTTAAAATGCATACTTCTCGAACAGTATACATTCGCACTATGAACACTGTAACAGACAGTCATTTCTACAATTTTCTGCACCTTTCTGTGCCAATTGTGAAGAGGGTCCTGAAGGGGGGGTCCTAATCCCATTTCCCAGCCCAAAATTTTTCAAAATCCCAGTCCGCCATGTTGTCAATGTACATCAAGACTGCTGACCAAAAAAACCGCGGGAACTGGAAAGAAGGGGACTGGACGACCGGAAGACGTAATTTCTTAGCAATTATAGTGTTCCACGTTCTTTTTACAGCAGAAATGTTGATTTTGGAAACAATTTGTAACATTTTTCACATGGTACACGATTACTGAACATAATAAGGCTTATAGTAATATGCTGTTTTGCAATGAATACGCTTTTCCCATTCCCAAAGTGGTTTTGAAATTCCCAGTCCCATTAGTAAAATCCAGGTAAAATCCCATTCCCAGTGGTACAATCCCATTTTCCCAGTGCAAAAAATGGCCAATCCCAGTTCCCATTTTACCCCTTCAGGACCCTCTGTGAACTCTTGTGAACTCTATACAGTAATTTTAATTCATTTTGTATTCAAACTACACTTGAGGTGATTGTTAATTTTTGACTATTTATTGGAATCTTGGTAGCTATAATGAGGTGTACTACAGTTCACATTGCTGTATTAGTATAGGTAATACCATGATCACCTCGGGATCCATTGTTTCAAGAGGGACGTTATATCTCTAACATCCCTCACCATAAATAGGAATTAGTTCTAATTTTCCCTCATCCCTATTCATGAGGCATATAGTCCCTCATATTGCAGTAATCGGGACTATCCTCTATTGGGTCCAATCAACCCAATAGGAATTCCAAGCCATAACAACCCGATACTAGACCCTACTCGAGATTCTTACCCATGTGGGACACATTGCCCGTCCATTGCTTAGTTTTTGCGCATGCATTAACAGTATTGTGAGCAAAGTAAACGCTTACAATCAAACATGGAATTTGGAAAACACTCTTTCATTGTACTAATGAAACAAAGACATGCCATCTTCCGTAATTCCCCAGAGTACGATATTTTCATAAGTCTTTGAAAAAAGACTATAATGTTTCGGCTTTAGTTAACCAAAAGGTACTGCGTTTCCATTTCCTCGGTGATCATGGTATTCATTATATGGTCCACTATGATTGTCCACTGTGAATTTTTATGGTGACATGTTCAAATTTAACGTTTTTCACGAATATGTTGTAAATGCGTTTTTTGATGATTTCATTAAATACCAAAATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13085	Fer2_3	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF13183	Fer4_8	4Fe-4S dicluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001041	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR004489	Family	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	Interproscan
IPR006058	Binding_site	2Fe-2S ferredoxin, iron-sulphur binding site	Interproscan
IPR009051	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR012675	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR017896	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR017900	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR025192	Domain	Succinate dehydogenase/fumarate reductase N-terminal	Interproscan
IPR036010	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR050573	Family	Succinate Dehydrogenase/Fumarate Reductase Iron-Sulfur	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0009060	Biological Process	aerobic respiration	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0022904	Biological Process	respiratory electron transport chain	Interproscan
GO:0031966	Cellular Component	mitochondrial membrane	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051537	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-