Gene detail

Detailed information of gene26872.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene26872.t1	GLYCOPROTEIN HORMONE RECEPTOR	chr8	13230508	13244620	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene26872.t1

ATGCCAGAAGAGACTTCAGCATTAATGTTAAGAAAGAGTCATATAAACATCGTAAAGGAATATGCATTTGATAATCTTCCATATCTTCTCTATATTGACCTCTCAAGAAATCGTATTTTTCGCATCAATCCGAAGGCCTTTGCTAACGGATCTTCAATTGAATATCTACGTCTTAACAATAATTTTCTGAAGGACATACCACCTACGATTTTCCATCCACTGATAAACCTTAACACGCTAGACTTGGGCAAAAATCTGCTTCAAAATATAACCGCAAGATTGACCGGACTAACAAATTTGAAAGTCTTGAGTTTTCATTCTAACAAAATAGTGCAACTATCAAGCGACGTCTTTCAATATACGACCAACCTGACGCATTTATATCTACAGAACAATAACATCTCTTTTCTACCTGATGGAGCTTTTCGTTTTCTCAACCAACTTGTTTTCCTCAACCTTGCAAAAAACCAGATCAGACACATAACAAAAGATACGTTTGAGGGACTCAAGTCATTGAAGCATTTGAATTTACAAGATAACAAGCTTTCTCGCATTGCACAAGATACGTTCGATGACCTTCAGCAATTGGAAACTTTACAACTGGACAAATTCATCCACTGTTGCTATGCCAAACAGTCAATTCCCAACCTGCAATGTTACGCATCAGAATCCAACGATTTTTCCAGCTGTGATGACCTGATGAAAAACCAAACGTTGAAAGCGTTCATTTGGATCCTTGGGATAAGTGCTCTTATTGGCAACTTATTAGTTATTGGAAGAAGAGTTTGCAGCAAAGATGCAGAAACCAGCACACATTCTTTATTGTTGACAAATCTTGCAATAGCAGATCTTCTTATGGGACTTTACTTGATAATCATTGCGTCGGTTGACATGAAATGGAGGGGAGAATACTTTAAGCATGACGTTAAGTGGCGTGCAGGAGTTGGATGTCGTATTACAGGAATCTTGACCATGTTATCAAGTGAGGTGTCGGTTGGAATGCTAGCAGTTGTCACTTACGATAGGCTCATTTGTATCGTCTTTCCCTTCACCGTTAAAAAAATGAATCGACGAAGAGCAATGATAATCTGCGGCTGCGTGTGGATAATTGGTTTGGTCATATCCATTGTACCAATCATGCACTTGGATTACTTCAAAGACAATGATGGCTTTGGTTTCTATGGCAGATCCTCAGTTTGTTTGCCACTGCAACTCTCCTCAGACCGCCCAGCAGGATGGGAATATTCTGTTGCTATCTTCCTGGTGATCAACTTCATTGCCTTCACCTTCATGCTAATGGCTTACATAGCAATATTCATTAAAGTAAAAAAGTCGTCACGAGCTGTTCGTTCCACAGCAACCAACAGAGAATCTGCCCTTGCGAAACGAGTAACATTTATTATCCTCACTGACTTCATTTGCTGGATGCCGGTAATAATTTTTGGTATACTGTCCATCACCAATACCTACAACGACCCTACCAAGCAAGTCTACATTTGGATTGCAGTGTTTGTGCTGCCAATCAACTCCTCAATCAACCCATTTCTCTACACCTTTACAACATTTGGCAAGCGAAAACAGTCAACGAAAACAACACCTGCAGGGACTCGAGAGTCTGGTATAATCGACAAAGAAAAGAAAGAGTCCATGGCAATGAAGCCGCTATTATCAAAAACAGTGGAAAGATCCAATGACAAGGAAGCCAACAAAAGCAATGTAGAAGAATCGAAGTCATCTGAACAGGTCAAGTACAACATACAATTATTGGAGAAGCTCGACATCCCGAAACTTGAGGATGGAATAGGTTTCGTTTTGGCGGACGTCGAATCAAATGGATCTTGTGACTGTTGCCTTGTCAAGTACTTCAGCCGGGATAGGAAAGAGGTCTGGAAGAAAGAACTGAAAATGATCTCATTATTAGATATAGACAAAGATGCAGATGGCAGCGAAAGTGTCGTAAAGTATCGCTGGCATTGTTTAGCAAGTGAGTATTCAAGTAAAGGGACATGTGACAAAGGTTCTAACCTGGATGATGCTTCATTGATATGTTATGAATACGTGCCAAACAAACTGCTACATGATTTTCTGGACAAAAAGAATACATTGACCTTTAAGACCTTGTGCTCCCTATGTATTGACATCATCTCTGCCATTGATTATCTACAAGGATTCGGTATCAGCCACAATAACATCAACCCTAAAGCCATTGTTGTCCATGAAAGTGAATCACAGGATAATCCATTAAAAGCAGTTCTAGTGGATTTCTCGAAAGCAAACAAGCTTAGAATCTATGATGACAGCTCCCTCGGAAAAAGCGATATCATACAGTTTACACGTCTGTTTAAAAACATGCTAAAGGAATGCAGCGAATTCACGGACTACGATCAGGTGAATGATGTTCTTTATCTTTGCGACCAAAAAAGAACCGAAGCTACCACTTTGGCGATTACAAATCGTCTACTAGAAGCGCAGAGTGCTTCAGAAGTGGAACACATCACACATCTCTGA

Transcript

gene26872.t1

AAATGCCAGAAGAGACTTCAGCATTAATGTTAAGAAAGAGTCATATAAACATCGTAAAGGAATATGCATTTGATAATCTTCCATATCTTCTCTATATTGACCTCTCAAGAAATCGTATTTTTCGCATCAATCCGAAGGCCTTTGCTAACGGATCTTCAATTGAATATCTACGTCTTAACAATAATTTTCTGAAGGACATACCACCTACGATTTTCCATCCACTGATAAACCTTAACACGCTAGACTTGGGCAAAAATCTGCTTCAAAATATAACCGCAAGATTGACCGGACTAACAAATTTGAAAGTCTTGAGTTTTCATTCTAACAAAATAGTGCAACTATCAAGCGACGTCTTTCAATATACGACCAACCTGACGCATTTATATCTACAGAACAATAACATCTCTTTTCTACCTGATGGAGCTTTTCGTTTTCTCAACCAACTTGTTTTCCTCAACCTTGCAAAAAACCAGATCAGACACATAACAAAAGATACGTTTGAGGGACTCAAGTCATTGAAGCATTTGAATTTACAAGATAACAAGCTTTCTCGCATTGCACAAGATACGTTCGATGACCTTCAGCAATTGGAAACTTTACAACTGGACAAATTCATCCACTGTTGCTATGCCAAACAGTCAATTCCCAACCTGCAATGTTACGCATCAGAATCCAACGATTTTTCCAGCTGTGATGACCTGATGAAAAACCAAACGTTGAAAGCGTTCATTTGGATCCTTGGGATAAGTGCTCTTATTGGCAACTTATTAGTTATTGGAAGAAGAGTTTGCAGCAAAGATGCAGAAACCAGCACACATTCTTTATTGTTGACAAATCTTGCAATAGCAGATCTTCTTATGGGACTTTACTTGATAATCATTGCGTCGGTTGACATGAAATGGAGGGGAGAATACTTTAAGCATGACGTTAAGTGGCGTGCAGGAGTTGGATGTCGTATTACAGGAATCTTGACCATGTTATCAAGTGAGGTGTCGGTTGGAATGCTAGCAGTTGTCACTTACGATAGGCTCATTTGTATCGTCTTTCCCTTCACCGTTAAAAAAATGAATCGACGAAGAGCAATGATAATCTGCGGCTGCGTGTGGATAATTGGTTTGGTCATATCCATTGTACCAATCATGCACTTGGATTACTTCAAAGACAATGATGGCTTTGGTTTCTATGGCAGATCCTCAGTTTGTTTGCCACTGCAACTCTCCTCAGACCGCCCAGCAGGATGGGAATATTCTGTTGCTATCTTCCTGGTGATCAACTTCATTGCCTTCACCTTCATGCTAATGGCTTACATAGCAATATTCATTAAAGTAAAAAAGTCGTCACGAGCTGTTCGTTCCACAGCAACCAACAGAGAATCTGCCCTTGCGAAACGAGTAACATTTATTATCCTCACTGACTTCATTTGCTGGATGCCGGTAATAATTTTTGGTATACTGTCCATCACCAATACCTACAACGACCCTACCAAGCAAGTCTACATTTGGATTGCAGTGTTTGTGCTGCCAATCAACTCCTCAATCAACCCATTTCTCTACACCTTTACAACATTTGGCAAGCGAAAACAGTCAACGAAAACAACACCTGCAGGGACTCGAGAGTCTGGTATAATCGACAAAGAAAAGAAAGAGTCCATGGCAATGAAGCCGCTATTATCAAAAACAGTGGAAAGATCCAATGACAAGGAAGCCAACAAAAGCAATGTAGAAGAATCGAAGTCATCTGAACAGGTCAAGTACAACATACAATTATTGGAGAAGCTCGACATCCCGAAACTTGAGGATGGAATAGGTTTCGTTTTGGCGGACGTCGAATCAAATGGATCTTGTGACTGTTGCCTTGTCAAGTACTTCAGCCGGGATAGGAAAGAGGTCTGGAAGAAAGAACTGAAAATGATCTCATTATTAGATATAGACAAAGATGCAGATGGCAGCGAAAGTGTCGTAAAGTATCGCTGGCATTGTTTAGCAAGTGAGTATTCAAGTAAAGGGACATGTGACAAAGGTTCTAACCTGGATGATGCTTCATTGATATGTTATGAATACGTGCCAAACAAACTGCTACATGATTTTCTGGACAAAAAGAATACATTGACCTTTAAGACCTTGTGCTCCCTATGTATTGACATCATCTCTGCCATTGATTATCTACAAGGATTCGGTATCAGCCACAATAACATCAACCCTAAAGCCATTGTTGTCCATGAAAGTGAATCACAGGATAATCCATTAAAAGCAGTTCTAGTGGATTTCTCGAAAGCAAACAAGCTTAGAATCTATGATGACAGCTCCCTCGGAAAAAGCGATATCATACAGTTTACACGTCTGTTTAAAAACATGCTAAAGGAATGCAGCGAATTCACGGACTACGATCAGGTGAATGATGTTCTTTATCTTTGCGACCAAAAAAGAACCGAAGCTACCACTTTGGCGATTACAAATCGTCTACTAGAAGCGCAGAGTGCTTCAGAAGTGGAACACATCACACATCTCTGAAAGCGATTACTACATGACATCAAACCCGTTCCGAAGTATTTTGGGATTTTACATTTTTGAAAACAATGTGCCGTGGATATGACTCCCCATTTTGTTCAAAAATGAAAACGAAATAAAATCTTTCATTTCAAAGTGACAGTATTTAAAGGTTTAGTTGCCATGGCAAACTCAAACAATTAAAAATATATTTTGAACTGACAACAATGGAAAAATACAAAATACTTTGGAACGGGTTATCAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF00560	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002131	Family	Glycoprotein hormone receptor family	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24372	GLYCOPROTEIN HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007189	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007190	Biological Process	activation of adenylate cyclase activity	Interproscan
GO:0008528	Molecular Function	G protein-coupled peptide receptor activity	Interproscan
GO:0009755	Biological Process	hormone-mediated signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016500	Molecular Function	protein-hormone receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-