Gene detail

Detailed information of gene25894.t1 in Actinoscyphia liui

Genomic Location: chr7:37700506...37717610
NR annotation: XP_032226240.2, lysine-specific histone demethylase 1B-like [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene25894.t1

ATGGCCGACAGCCTTCATGTAGTGTCACGCAGCCGAAGACAGCCCAAAAAGAGAAATCTAGATGATGATGACAGTTCTACTTTGACTCACCGTTACAGAAAGTGTGAAAATAGTGGGTGTCCATGTGAAAGGCCTGTTTGCTGCGCAGAACTGAGTCATGGTTGTAGTGGTGATGGATATACATCTAGATGGTACCACATATCCAATGGGGAACACTTTTGTAATGCATGTTTTGATCACATGTATCGTAGTCACAAGGAAGGTTATGAATCCTATGCTAAATGGAAGTTTGCCTGGGGTGGTTGTTGTCGGAGAGAAGCCAGTACGAAGACATATGTATCTGAGATGATCTTACAGTATTGGGTGCAGTGTAAGAACTGTGGCAAATGGTGTGCTCTTCCAAGAACTGAAGGTGACTTGACTAGTGAATTGTCCAAGTCCTGGATATGTAAATCATTTGCTGCTATACAGAAAAAGGCAAAACTAAAGGGTCCAAGTCCATGTGATTTTCCAGAAGATAAGATGGTTGCCAATGCACTATCACCAGGCTGGCTGGCCAGCTTATTTGAACCACCATTGTTAAAAGACAGTCCTGCTGCCCCATACTTAAAGTCCTACTTTGCTGATGGTGTAGGGTTATCTCCTGTACTCAGTATAGATGACAGTGAACATCATGAATGTACCACAGGCAATACAGGTTCCGTGTATGTGCAACCATTCTATAACCCTGATGTTGGTGTGGCGGCATTGACCTTTAGACCTGATACAATGGAGAGACACGAAGAGGATAACTTTCCTCAGTTTGCTGCTTCAAGGGAAGGATCTATCATTTATCTTGCCCTGAGGAATTTGATTCTAGCATTATGGGCCTCTAATTGCAAGGAGTACCTAACAAAAGAGCAATGTGCTAACCATATCATCACAAGAGGACTGGTCAGGATATGTCTTGTTGAGGAAGTTCAGCATATACTGCACTACCTGTCAGTTAAAGGCATAATAAACCATGGTATACTGGATGTAATAAACCAGCCATTATTAAAACCCAAGTTTTCAGTGGTTGTGATAGGAGCAGGAGCTGCAGGGTTATCAGCAGCAAGCCATCTGAGTAAATATAATGTCAAGGTGACTGTACTGGAAGCAAGAGATAGAATAGGAGGGCGTGTATGGGATGACAATACTCTAGGATGTTGTATTGGTAAAGGTGCACAGATACTGAATGGGTGCATCAATAACCCTATATCAGTACTCACTCAGCAGTTGGGAGTCAGCATGCGGCATGTCACTGGCCATTGTGACCTGATAGGAGATACAGGAACACCAGCTGACATTAATGTAGACAAGAAAGTAGAGTTTCATTTCAATGCAATTCTTGATGCCATAGCAGAGTGGAGAAAGTCATGTACTCAAGACCTGCCATTAGAAGATAGAATACGTGAAATGCACAAGCTCTTCCTAGAGGAAACACAAGTTGAATTTTCTGAGCAAGAGAACCAACTGCTGGAGTTCCATCTTGGAAATCTGGAGTATTCTTGTGCTGCCCAATTGAATCAAGTGTCTACTCTACATTGGGATCAAAATGAGTCATACCCTCAGTTTGTTGGTGACCACACCCTCCTAGAGCATGGATTTGGTGTTCTCCTTAAAGGCCTGGCCAAAGATCTGGATATCAAGTTAAATTCTCCTGTATCCAATATTGATTATAGCCAAGACAAAGTAACTGTAATGACTACAAAGGGATTACAGTTCATAGCTGACAAGGTCATTGTTACTTTGCCGTTAGCTGTTTTAAAGTCTGGAATGGTAACATTTACACCTGAACTTCCTGCAGAGAAAACTTGTGCTATTACAAGCCTTGGAGCTGGTGTCATAGAAAAGGTTGCCTTGAAGTTTGCACATAATTTCTGGAGTAAGAAGACTGGAGGTGCAAACTTCTTTGGGCGAATTCCTTCATGTAGTAAGAACAGAGGTAGCTGTGGGATCTTCTATGACTTAAGTACATGTAGTAAGGCAAAGAAGTGTCACGTTCTGATGACTGTGCTGTCAGGGGAGCTGGCACTTCAAGCATCAACTATGACAGACCAACAAATTGTTCAGCAAGTTATACACATTCTGAAAGGACTATTTCCTGGTGAGGCAATTCCAAGCCCTGATAAGTACATGGTTAGTCATTGGGGTAGTGATCCCTACTCCAGTATGGCTTATTCATTTGTACCACTGGGTGCTTCTGGACAAGACTATGATGAAATAGCAACACAACTAGACAACAAGCTGTTCTTTGCTGGAGAGGCTACAAATCGACAGTTTCCTCAAACAGTAACTGGTGCATATCTCAGTGGTATTCGAGAAGCAGAGCAAATCCTTGTACAGATGTTTAAGGATGATTTATGA

Transcript

gene25894.t1

Protein

Uniprot

Uniprot term	Description
Q8NB78	Lysine-specific histone demethylase 2 OS=Homo sapiens OX=9606 GN=KDM1B PE=1 SV=3
Q8CIG3	Lysine-specific histone demethylase 1B OS=Mus musculus OX=10090 GN=Kdm1b PE=1 SV=1
Q21988	Lysine-specific histone demethylase 1B homolog OS=Caenorhabditis elegans OX=6239 GN=amx-1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07496	zf-CW	CW-type Zinc Finger	Domain	Interproscan
PF04433	SWIRM	SWIRM domain	Domain	Interproscan
PF01593	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011124	Domain	Zinc finger, CW-type	Interproscan
IPR007526	Domain	SWIRM domain	Interproscan
IPR050281	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR002937	Domain	Amine oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19413	KDM1B, AOF1, LSD2; lysine-specific histone demethylase 1B	EC:1.-.-.-	Chromosome and associated proteins	ko03036	deepkoala