Gene detail

Detailed information of gene25711.t1 in Actinoscyphia liui

Genomic Location: chr7:33276707...33288965
NR annotation: XP_020910676.1, cingulin [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene25711.t1

ATGACAACCAACCAAAAAGAACTCCAAAGTCTTCGCTGTACGATATGGCATTTGGTGGAAGAGCAAAACAGAACAAGAACCAAACTGATCGGTGTTCAAGTTCTCACAGATCAGTTGGATCAGAAAAGTGAGGAATGTAGGGTTTTAAGATCGAAATTCAAGCAACTAGAGGTATTACTATCAAGAGCAGAAAACAGGATAGCTCAACTAACTCTACATCTGAATGACAAAGGTCCTTCTACAAGCAAAGCAGGAATTGTCACTCCTGGGGTCTCGAAAAAGCTATTGGAAACTATTACTAGGGAAAATACAAAGCTTAAAATGGCTTTAGAACATGTACTAAACAAGCTACCAAACGGAGTCGACCTTGCTGTGGAAAATCGTGATCTTCATGATCTGGTTATGGCACTAAAACAAGAATTAGAACAAAACAGAAAAGAGACAGAAGAACTTCGAGCTGCCCTTAAAGCAGTAGAAACAGATGATTCAATGTCACTACAAGAACAGATAGCTCATCTCACTGCACAAGTTACACAGACTGAAAGAAGTCTAAAAGCAAAACAAGTTTATTGTGAATCTGTTGTGTATGAGAATGAAAGGCTAAAATCAACTGTGGAGACAGTGAAAAGTGGACAAATTACGCAGCTTGCAGCATTTAGAAAATTGGCCAATGATGATCCAGCAATAAAAGATGTTCTGGAGTTAACTTGGTCTGAAGATGATGTTGATGCAGGCCAAAACATCGACATAGAGAAACTCACTAAGCAAATTTCATCTTTACAAAAAGAATTAGAAGACTTGAAAGGAATCAAAGCAACACTGTCCCGAGAGAAAGCCCAAATCAGTGATCTGCTAACAAGAGAGATAGAAGAGCTGAGAAGTGAACATACAATACGGAAAGAAGAAAGAGAAAAAATGCAAAGTGACCTACAAGAAATGGATATGATGAAAGAACTGCTGCAAGGACAGTGCAAAGACTTTGAAAATGACTTTAAGATGGAAAGACAAGAGAAAGACAAGCTGGATGTCGACCTAAAGAAAGAAAGAAAGCTAAAACAGCAACTAGCACAAGCAAACAAAAATCTGAAGGAAGAAAATGATAAAATCAAACAACTCATCAAAGATGAATATAATAGACAACACAAACAGCAAATTGAAGATACCAAAGAGCAAAGTAAAAGTAATAGATGGCACAGTGAAAGATGGCTAAGAATCACTGCATCGAAGTGCTTAGAAGCTGTCAGAGTTGGTAAACTTATCCTTGATTGTTCAAATAATGCATCTATTAGAAGTAAGAAATTTATTTCTTCACACATTTGGAAGTTAGATGGTCCTCAATTTCAATCAATCTGGATGGCACAAGGCTTACAGAATGAATCTCCTGCCATTGTTAAGTATCAAGAACAAACAAATAATGTAGTTGAGGCTTCTGGACTGTGGGTAAATCCCAAATTCCCTTTCCTTGGATGTTCCCCTTATGGTCTAATTGGTGATGATGGAGTGCTTGAGATCAAGTCGTTGAAGATTTTTAATGAACATAGCATAGAGAATGTGGTTGCAGACAATGGTAAGCCGGTGGTGTCCAAAGATATCATGAACAGACAATGTTTTTCTGTTAAAGATAAGAAGTGCATTCTAAAGCAGACCCACAGCTATTACTACCAAGTACAAATGCAGCTTCTTGTGACTGAAAGGAGATTTTGTGATTTTGTTTTGTATGCAAAGAATGGGGCAGTCTCAATAGAGAGGATTGAGCAAAACAAGAAAGTAATCGATGAAATATTGGGTACTCTCACAGCATTCTGGACAAGAGTCATTGCACCAGAATTCATTGAAATGAGAGTACCCAGAGATCTTCAACCTTTTATTTTGCCCAAGGACTTTGTAAATTATTTACAACAAGGGAAATCAACCTCTTCAGATTGTCCTCTCAATCTTGATACTGACATCCCTCCAGCAGAGTCACAGAGCCCCCCCGACAGCAACGCCCTACCAGCAGAGTCTCAGTGCCCTCCCGACAGCAACACCCTACCAGCAGAGTCACAGAGCCCTCCCGACAGCAACGCCCTGAACTAG

Transcript

gene25711.t1

TGAAGATGTGACTAGATTGACTTTTGGTAAAGACTGGCATCGAAAATGACAACCAACCAAAAAGAACTCCAAAGTCTTCGCTGTACGATATGGCATTTGGTGGAAGAGCAAAACAGAACAAGAACCAAACTGATCGGTGTTCAAGTTCTCACAGATCAGTTGGATCAGAAAAGTGAGGAATGTAGGGTTTTAAGATCGAAATTCAAGCAACTAGAGGTATTACTATCAAGAGCAGAAAACAGGATAGCTCAACTAACTCTACATCTGAATGACAAAGGTCCTTCTACAAGCAAAGCAGGAATTGTCACTCCTGGGGTCTCGAAAAAGCTATTGGAAACTATTACTAGGGAAAATACAAAGCTTAAAATGGCTTTAGAACATGTACTAAACAAGCTACCAAACGGAGTCGACCTTGCTGTGGAAAATCGTGATCTTCATGATCTGGTTATGGCACTAAAACAAGAATTAGAACAAAACAGAAAAGAGACAGAAGAACTTCGAGCTGCCCTTAAAGCAGTAGAAACAGATGATTCAATGTCACTACAAGAACAGATAGCTCATCTCACTGCACAAGTTACACAGACTGAAAGAAGTCTAAAAGCAAAACAAGTTTATTGTGAATCTGTTGTGTATGAGAATGAAAGGCTAAAATCAACTGTGGAGACAGTGAAAAGTGGACAAATTACGCAGCTTGCAGCATTTAGAAAATTGGCCAATGATGATCCAGCAATAAAAGATGTTCTGGAGTTAACTTGGTCTGAAGATGATGTTGATGCAGGCCAAAACATCGACATAGAGAAACTCACTAAGCAAATTTCATCTTTACAAAAAGAATTAGAAGACTTGAAAGGAATCAAAGCAACACTGTCCCGAGAGAAAGCCCAAATCAGTGATCTGCTAACAAGAGAGATAGAAGAGCTGAGAAGTGAACATACAATACGGAAAGAAGAAAGAGAAAAAATGCAAAGTGACCTACAAGAAATGGATATGATGAAAGAACTGCTGCAAGGACAGTGCAAAGACTTTGAAAATGACTTTAAGATGGAAAGACAAGAGAAAGACAAGCTGGATGTCGACCTAAAGAAAGAAAGAAAGCTAAAACAGCAACTAGCACAAGCAAACAAAAATCTGAAGGAAGAAAATGATAAAATCAAACAACTCATCAAAGATGAATATAATAGACAACACAAACAGCAAATTGAAGATACCAAAGAGCAAAGTAAAAGTAATAGATGGCACAGTGAAAGATGGCTAAGAATCACTGCATCGAAGTGCTTAGAAGCTGTCAGAGTTGGTAAACTTATCCTTGATTGTTCAAATAATGCATCTATTAGAAGTAAGAAATTTATTTCTTCACACATTTGGAAGTTAGATGGTCCTCAATTTCAATCAATCTGGATGGCACAAGGCTTACAGAATGAATCTCCTGCCATTGTTAAGTATCAAGAACAAACAAATAATGTAGTTGAGGCTTCTGGACTGTGGGTAAATCCCAAATTCCCTTTCCTTGGATGTTCCCCTTATGGTCTAATTGGTGATGATGGAGTGCTTGAGATCAAGTCGTTGAAGATTTTTAATGAACATAGCATAGAGAATGTGGTTGCAGACAATGGTAAGCCGGTGGTGTCCAAAGATATCATGAACAGACAATGTTTTTCTGTTAAAGATAAGAAGTGCATTCTAAAGCAGACCCACAGCTATTACTACCAAGTACAAATGCAGCTTCTTGTGACTGAAAGGAGATTTTGTGATTTTGTTTTGTATGCAAAGAATGGGGCAGTCTCAATAGAGAGGATTGAGCAAAACAAGAAAGTAATCGATGAAATATTGGGTACTCTCACAGCATTCTGGACAAGAGTCATTGCACCAGAATTCATTGAAATGAGAGTACCCAGAGATCTTCAACCTTTTATTTTGCCCAAGGACTTTGTAAATTATTTACAACAAGGGAAATCAACCTCTTCAGATTGTCCTCTCAATCTTGATACTGACATCCCTCCAGCAGAGTCACAGAGCCCCCCCGACAGCAACGCCCTACCAGCAGAGTCTCAGTGCCCTCCCGACAGCAACACCCTACCAGCAGAGTCACAGAGCCCTCCCGACAGCAACGCCCTGAACTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051703	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11223	STAT5A; signal transducer and activator of transcription 5A	-	Transcription factors	ko03000	deepkoala