Gene detail

Detailed information of gene24547.t1 in Actinoscyphia liui

Genomic Location: chr7:13566400...13576798
NR annotation: XP_020893575.1, cellular nucleic acid-binding protein [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene24547.t1

CTGAGTAGAGGCAGCTTTTGGTGCGAGACCGGCTGAGAAAAGCAGAATTTCCACGGGATTTTGAGGTTGAACATCTGTAAAACTTATTCAGGTTCAACATGTCGAACGTAAAGTGCTACAAGTGTGAACAAATTGGACATTTTGCCCGCGATTGCCCGTCAGCCAGCAGCGGAGGTGGTGGTGGCGGTGGCAGTGGTGGATCAGGGAGTTTTGGAGATAAGTCGTGCTACTCATGTGGGAAAACTGGACACTTTTCTAGAAATTGCCCCAAGAAAAATTTCTCAGACAAGTGCTATGCTTGTGGCAAGAAGGGCCATGTGTCTAGAGATTGTGAGGATGGTAGCAGTGACGTGTGTTACAACTGCAATGAAAAGGGCCACATCTCAAGGAACTGCCCTGAACCCAAAGTGGAGACCTGTTACAACTGTGGGGAGAAGGGCCATATGCAGCGTAACTGTCCTGATGCTGACAAATCCAAAGGTGGCAGATCTGGTGGTACTTGTTACACCTGTGGTAAGAGGGGCCACTTTGCACGGGACTGCACTTCAGAAGAAAAGTGCTACCGTTGTGGCAAGGGAGGCCATTTTGCCAGAGATTGCACAGAACCACCTTCCAATGAAGAACAAAAGTGCTATTCTTGTGATGAAACTGGCCATTATGCCCGTGATTGCCCCAAGGATGAAAACCGTTGCTACAACTGCAAGCAAAGTGGCCACATTGCCAGGGATTGCACTAATGAGCCTGAAGAAGAAAAACCTACTGAAGATGAGTAAACAATCCAGCAGACTAAGGCTCCAACTGAAGTATAAGAATGAAGTGTTGCAGGAGTCTCTGCCATAGTTAGGTGAATGTTGAGTATTGTGGTTTACAGGTGATAAAAGGCCGCAGCCAGTGACTGAGGTATCTGCAAGGTGTATATTACGCCAAGCAAGATTTGGAAGCACTGTTCATGTAATTGCCTTTAATTTCTTAATCACACCAGTAAATTTAAACATGTATTTGAAGTTGCCCATGTAGGATCAATGTAGAGCCTGGATCTCACTAGCAACATGAGCATAACACAAGCTGTATATATGTACTCAGTAATGTGCTGCTCTGTAGCAGTGACTCTTTTTTTTACATGTACTCAGTAATGTACTGCTCTGTAGCAGTGACTCTCTTTTTTACATGTACTCAGTAATGTACTGCTCTGTAGCAGTGACTCTCTTTTTTACATGTACTCAGTAATGTGCTGCTCCATGGCAGTGCCTGTCTTTTCTAACACCTGTGAGATAAGTGAGTGCTTATGTTGCTTGTGAAAGCCAGGTGATCAAAATCTGACTTCTCCTTTAGAAGTCATGCAGTCTTGAGGAGAACTTAGAATTTGATCAGAGATCACTTATTGTTTTTGCAAAGACCTCTTCATTATTTGTTTTGTGTATTATTGTATGGGCTGACTGGAAACCTTGTAGTGTTTAAGAGCATTAAATGGTTGCTCACTTAGGACTAAGGGTGTAATATGCAATTCAAGGGGACCATGTGGCAAGAATGGAGTAAGTGATATATGATCAATTCCCAAATTCTCCTTGAAAATTCAAAGATCTTTGAGGGGAACTTAGGATTTGATCATGGATTCTTGCAGGGAGCCCTTCAATTATACAGTGAAACCTTGGTATAACAAATTGCCAAAGAACTTTGGTTCTTTATTACTATATTTATAAAGGGGTTTCACAGGGTTATCAAACTTGTGATTTCCTGTTGACTTTCATGTTTTCACCCGCTACAATATTCAACAGCAAAAAATTATTTTAGAAAGCTTCTAGGAGGCCTCCAGCTATGAAAGTTATTTGCATTCCAAAATGTTCCAATTACAGAAATAATATTGATTTGACATCCCTGGGTTTGTTTTAAACTGCATTCCATTCCTCAACTTTGTCTGCTTCTGAGCTGAAAAACAATGGTTCTAAGAACATTGTTATAACTGCTACATTGTAATCAGTGTGTTCGCTGGGCTGTATAAGGATTCATTTTCAGGAGTGTCGCTAAGAATATAGTCCACTGATTAAGAATAACATGTAGTTGATCTGGCTAAATATTCTCAATTATACGATATTACTATACGAAATTACTATTGTAAGTGATCCAGCTTGTCATCACTTCTTTGAGGCCACAAATTTTGTCGGCAGCTGACACTACTTACATATGGTAACACCCCTACACAGCACTATGTCATAACTAGGTTAATAGTTATATCAGGGTTTCACTGTTAATCAATTTATTGATCATCATTTGAAATTAAATACAATTTTTAATTTAAAAATTCTGTCAGACTCACAAACCGGTGTAGTATTGCCGAAAGCAATATTATTAGTAATAGGCCGTGTTTGATTGTTAGTAGTAGTAGTAGTAGTTGTAGTAGTTGCAGTAGTAGTTATTGTAGTAGTTGATGGGGTGTTGTGGTGGTGGTTTTTGGTCGTTATAGGACAAATATGTACTCATTTCATTGGGATCTGAATTTATTCCCATTAATTTTACTTCATGGCGATGCCGTGGATCAATGTCATGTTCTTCAATAACTTTCACAAACTCTCTTTTACTAATTATTTCTGTCAAAGTTTTCACAGTAAATCTTAGCCTCTTTTGAAGACTTAGGTTCTTTAGTTACAGTGAATTCACTCTAAAGTGGACACCCTTGTGATCAACTCTTACTGTCTGCACTAGAGGTGTCTGTCATGGAGAGTTTAAGTACAGAAGAAACGGAGCAGTTCAATTTGGGTAGGACTAGACAAAGGTGTCTGCCTTACATAGGTGTCCATCTTAGAAGGGTGTCTGCCTTAGAAGGGTGTGTCTGCCTTAGAAGGGTGTGTCTGCTTTAGAGGGGTTGGTCTGCATCATAGGTGTTGCCTTATATCATTATGGGTGTCTGCTTGGTGAAATTCACTGTAATATTCAGCAATTAGAAATACTACCTATATCAGCCAAAATTCTGCACCAGAGATGATGCTGGTGAAAGGCATGACTATAATTTATCGAAAACGACGAGATGCTCCAAGACTGGAGCGGACTGTAGATACATTTATCTACATTGTCATCAGATGGGGTGTTGAGAATTCTATTTTGCAGCGAAATAGTGAATTTTATCTAATTGTCAATGGTATTCATGCTTTTAAAGCTAAATAGGCTAGTTTGCACAAGCAACAGAAACAGGAGTAAGGAGTTTTTGACAGGGTAGGAGGATTTATGGAAACAACAGGAATGGCATCTATTTCTGTGAAATAGAATTGATTTGCTGTTGAGGTGTGGCTGTTTGATGTGAACTGTCAATCTGTTGGTTGTGTAATCTAGCCTTCTACCATAAGAATGAATTGTGTGTAGGAGCTGAAGGTGCTTGGTGAAGTCCAGTAGACAGTTAATGCTGGATTGTCTTGTTATTCAATAATTTTAATTTGTTTTCAGAAAATTCATTTTTCACTTACTCAATTCAATTTGCTTTTTAACAAACAATCATTCTTAACTCTGAGTGTAAAGGAGAGACAAAGTGTATTATGGAAATAAATTGAACATTGGCACTTTACTGTGTTATTAATATTGTATTTGTGGGAGTGGGATTGGCGGAGCCTCTGTAAATCACGTCTAAAATACTACAAAAAATAAATCTGCTGGTCCCTCTGGATACTAGCCTACAGAGTTGCTGAATGGGCTACCCTGTAAGTAAGTTTTAAACTTTATTGTAGCAGCCACAGTTAATCAGGAATGTAAAAAAAATTCCCATTGATGGTTTTGGAATCAATGGGAAAAAACGAACTATTCCCATTGATTCAAAATGGGAATATGACAAAATCCATGGATTTTATACATTTTCCCCTGTGATTCACTGCATGAAAGATAGTGAAATTACAGAGTTATAGCAGTTTGTGTATGAGTGGGAAACCTACAGGATGACATATACGGTATGGTTGGACATAGTTATGGTGTAGAAAATATACTCAATCATTATTCAGAAGTTATGTTTATGGTACAGCCAGACTGAGGTGAAAATCTTACTGTTCCATTTCCCACTCAGACTGTTCTAAGGTGGAAGGAAAATCTGTCCCAACCATCCCAGGATTAGTGCTAATCTTTGATTCCATAGCCACTGACCCACTATCACAATGACTAGAGAATGGGGCTAAGTCCAGTAAGCAACATGAAGCTTGTGCCACCAATCTGCTAGCCAGAAGGCTCTTTAACCATTGGACCATGTCCACCCCACACAAATGCAACAGTTTATGAACTACATAGATTATTTTGGAACAAGATGATAAGGTGCAAACAAGGCTCTCCATGCTTGCTTGATTGCATTCCAAAAAAGAACAGGACCAGATCCTCTCCTAAAAATAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR051714	Family	CCHC-type Zinc Finger Nucleic Acid Binding	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23002	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0045182	Molecular Function	translation regulator activity	Interproscan
GO:2000767	Biological Process	positive regulation of cytoplasmic translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09250	CNBP; cellular nucleic acid-binding protein	-	Transcription factors	ko03000	deepkoala