Gene detail

Detailed information of gene24421.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene24421.t1	RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG	chr7	11634901	11651723	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene24421.t1

ATGGCAACAGGCAATGCCATGTTTGGCACAACTGCATCTGGCATTCCTCTCTCACATTTAGATTACAGCTATATTGGAAAGTGTACCAACACTGCTGAGCTTGAGAAAATCATTAAAGTTTTGAGGTCTGGAGCAGAAGGATCCTATCCAGAGCTAACATTATTTGCAGAGAAACAACTGGAAAGCTTCAATCCCAAGAGCAAACTTCTTCGTAAAGAAATTCATATACAGTCATACAGAGATCTTGATCATGAAGAGAGGGAACAGATTTCACATGAATTTAAGGACTGGATTTCAGAAATCAATGAAAAGGATATTCTACTAAAGAAAGATAATGAGCTAAAACCACACGGTATTGACTACTTTCCACCAATACGATCAGCCAAAACAGTGGGCTCAACTACCTCAGGCAGTGCACAGATTTCAAATGATATAATGGGATTAAAGACTAAAGGAAAAGAAACAGCTGCTATTCCTAGAGAATATCAAGAGTGGGACAAGTTTAACGCAGATGAAGAGTTGAAAGCACAAGAAGAGAAAGAAAAAGAGGAAATCAAATCAAAACAAGAAAAAGCAAAAATTAATACCAAGGTGGCTGAACTTCCTAGTGATGTTGAAACAAGTGGTAAAACAGATGCAGAGCTGGTTGTCTTGGCAGACAGAGAGAAAGACAAGGGTAACGAGGCCTTCCGCTGTGAAGACTACAAGGAATCTCTGGTGTATTACTCACGCAGCATCAATTATAAACCCACTGCAGCTTCTCACAACAACAGAGCTTTTGCCAACTTAAAACTGGAGAAGTACAGAGAAGCCATTGAAGACTGTAATGTGGTTATTAGCATGGAGCCTAACAATATCAAAGCACTTCTAAGGAGAACTCTGGCATACAAGAGTAATGGTGAAAGAGACAGTGCCAGACATGACCTGACTAAAGTTCTAGAGATTGAACCCAACAACAAGAGAGCAAAGGAACTTTTAAGTGAATTGAATGAAACTGCAATTGCGGAGGATGAAAAACCCGCCAATCCTCAAGTAAACGGAGAAACCCAAACCAAGAAAAAAGGAAAACGTCTTAAAATCGTAGAAGTAGAAAATGATGAAGAACAAGCAGTTACGGAAGAGAAAAAAGTTGAGACCTCTGTAGATGGAAATGTTGTTTCATCTCATGAGTCGACTGGTTCTGAATTTAACTCTGTATCAACTACTGTTGATGAAGAGAGTCCTGGTGACATTGAGAACAGTCTGGGTAGTACGTCTGAAATAAATGCAGAGGCTTCTTTAAGAACTGAAAATGACAAGGAGCAAGTGTGGCCTAGTTGTTCTTCAGCCAAGAGCAATGAGGCTCAGACAAGTGGTACTGTAGATGAGAAGGAACCACCAGAGGTAACAACCTCACCGTCAGTAAGCACACCACCACCAACACCACCAGTAGTAGTAGAACTCCCTGGGATAGTTCTGAGGGCGAAGGATGAAGCCACATCTCTCTTCAAACTTGGAAGATATGCAGAAGCGGCAGAAAAGTTTACTTCAGCAATTGAAGTTATTGAAAAAGATAAAACACAGTTCAAGTCAGCTTTATCGTCCCTTTTAAACAACCGTGCAGCATGTCTGCATAGAATGGGTGATGCATCTGGTTGCATAAAGGATTGTACAGCTTCCTTGGAGTTGATTCCTGACTCTGTGAAGCCATTGCTCAAAAGAGCTGGGTCCAATGAAATGCTTGAGAAATATGAGAAGTCCTATTTAGACTTCAATTCTGTGGTATTCCTGGACCCCAACAACAAGAACGCTATGGAAGGCAAATCACGAGTCAGTAAACATCTGATCAACATTTATGGCTCTTCATGGAGAGAAAAACTTGCAGGTGTTAAAGTGTCATCAACACCAACATCATCAGAGTTGCTGAATACAGACAGCAGTGCTACAGAGAAACCATTCCATATCTTCCAAGATAATCAACCAAAAAGACCAGGTTCTGTGGCCTCCACTCCTCCAACAAATACTACAAAAAAAGAAGAACCCATTACAAAAACTACTGCTCCTGAGACATTTGGACAATGCAAAGAGAAGGGCAACATGTTTGTTAAAAAGGGAAAGCTAGAAGAAGCTGTCCATTGCTACACACAATGCATTGAGCTTGATCCCAGCAAAGTAGCAGTTTACACTAACAGAGCTCTTTGCTATCTTAGAATGGAAAAGTACAATCTTGCTGAGGAAGATGCTTCAAAGGCCCTTGATTTACAAGAAGACAATGTTAAAGCACTGTATCGTTGTGCACTAGCTAGAAAGGCATTACAGAAGTACGAAGAAGCTGCTAAGGACCTTGTCAACTTAATTAAGATTGAACCATCCAACAGTGCAGGCAAAAAAGAATTAGATATTGTGTTGAATCTTTGTCGAGAGCAACGAAAGGCCAAGCAGAAGGCTGCAAGCAATTCCCAGGTGAATGCAAGTGAAGTGAAGACCAGTGAAAAGCAAAATGATAGTAAGGTTGAAACCAGCAAGAAAACAAGACGGCGGGTGCAGATTGAGGAAGTCAATGGAGAAGAGGATTCTACTCAAGTACCAAGCAGTCCATCAACAGACCCTAAAAAGCCTCGTGATTCTTCACCCAAAGTAAAAAAGAACGACATCAAACCACAAGACTCGAGCAAGAACACCAAGGAAGGAGCAAAAGTGAAAACATCACCGTCTAAAGACTACAAGAAAAAGAATGTTAAGCTTCATAAGGCATCAGCGTTCGACTTCTACCAAGCCTGGAACTCAGTAAAACAAAAAGACCTTTCCTCTTATGCAGATATACTTAGACAGCTGAAGCCTGCTATGTTACCTAAAGTGCTAAGTAACAAGCTGGATGCTGACATCCTGCGTTGTATCATTGGTGCAATTACTGAACACTTGTTCCCCAACGGTGAAGAGAAGTTTTCGTTTGAAATACTGCAACACATGTGCAAGGCTCAGCGGTTTAATATGGTGATGATGTTCCTTGACAGCAACGATACACGAGCTATTCGCGATGTCTTCGCTAAACTGGCTACAACACGAACCAAGAATGAATTTGTAGATATCGACGTATTTAACTGTACTGTGAAAAAGTACAATCTTTGA

Transcript

gene24421.t1

AAAAGGAAGAAATTTTGGCTGGTTAACTGCTGGTGCACCAATAACCATGGCAACAGGCAATGCCATGTTTGGCACAACTGCATCTGGCATTCCTCTCTCACATTTAGATTACAGCTATATTGGAAAGTGTACCAACACTGCTGAGCTTGAGAAAATCATTAAAGTTTTGAGGTCTGGAGCAGAAGGATCCTATCCAGAGCTAACATTATTTGCAGAGAAACAACTGGAAAGCTTCAATCCCAAGAGCAAACTTCTTCGTAAAGAAATTCATATACAGTCATACAGAGATCTTGATCATGAAGAGAGGGAACAGATTTCACATGAATTTAAGGACTGGATTTCAGAAATCAATGAAAAGGATATTCTACTAAAGAAAGATAATGAGCTAAAACCACACGGTATTGACTACTTTCCACCAATACGATCAGCCAAAACAGTGGGCTCAACTACCTCAGGCAGTGCACAGATTTCAAATGATATAATGGGATTAAAGACTAAAGGAAAAGAAACAGCTGCTATTCCTAGAGAATATCAAGAGTGGGACAAGTTTAACGCAGATGAAGAGTTGAAAGCACAAGAAGAGAAAGAAAAAGAGGAAATCAAATCAAAACAAGAAAAAGCAAAAATTAATACCAAGGTGGCTGAACTTCCTAGTGATGTTGAAACAAGTGGTAAAACAGATGCAGAGCTGGTTGTCTTGGCAGACAGAGAGAAAGACAAGGGTAACGAGGCCTTCCGCTGTGAAGACTACAAGGAATCTCTGGTGTATTACTCACGCAGCATCAATTATAAACCCACTGCAGCTTCTCACAACAACAGAGCTTTTGCCAACTTAAAACTGGAGAAGTACAGAGAAGCCATTGAAGACTGTAATGTGGTTATTAGCATGGAGCCTAACAATATCAAAGCACTTCTAAGGAGAACTCTGGCATACAAGAGTAATGGTGAAAGAGACAGTGCCAGACATGACCTGACTAAAGTTCTAGAGATTGAACCCAACAACAAGAGAGCAAAGGAACTTTTAAGTGAATTGAATGAAACTGCAATTGCGGAGGATGAAAAACCCGCCAATCCTCAAGTAAACGGAGAAACCCAAACCAAGAAAAAAGGAAAACGTCTTAAAATCGTAGAAGTAGAAAATGATGAAGAACAAGCAGTTACGGAAGAGAAAAAAGTTGAGACCTCTGTAGATGGAAATGTTGTTTCATCTCATGAGTCGACTGGTTCTGAATTTAACTCTGTATCAACTACTGTTGATGAAGAGAGTCCTGGTGACATTGAGAACAGTCTGGGTAGTACGTCTGAAATAAATGCAGAGGCTTCTTTAAGAACTGAAAATGACAAGGAGCAAGTGTGGCCTAGTTGTTCTTCAGCCAAGAGCAATGAGGCTCAGACAAGTGGTACTGTAGATGAGAAGGAACCACCAGAGGTAACAACCTCACCGTCAGTAAGCACACCACCACCAACACCACCAGTAGTAGTAGAACTCCCTGGGATAGTTCTGAGGGCGAAGGATGAAGCCACATCTCTCTTCAAACTTGGAAGATATGCAGAAGCGGCAGAAAAGTTTACTTCAGCAATTGAAGTTATTGAAAAAGATAAAACACAGTTCAAGTCAGCTTTATCGTCCCTTTTAAACAACCGTGCAGCATGTCTGCATAGAATGGGTGATGCATCTGGTTGCATAAAGGATTGTACAGCTTCCTTGGAGTTGATTCCTGACTCTGTGAAGCCATTGCTCAAAAGAGCTGGGTCCAATGAAATGCTTGAGAAATATGAGAAGTCCTATTTAGACTTCAATTCTGTGGTATTCCTGGACCCCAACAACAAGAACGCTATGGAAGGCAAATCACGAGTCAGTAAACATCTGATCAACATTTATGGCTCTTCATGGAGAGAAAAACTTGCAGGTGTTAAAGTGTCATCAACACCAACATCATCAGAGTTGCTGAATACAGACAGCAGTGCTACAGAGAAACCATTCCATATCTTCCAAGATAATCAACCAAAAAGACCAGGTTCTGTGGCCTCCACTCCTCCAACAAATACTACAAAAAAAGAAGAACCCATTACAAAAACTACTGCTCCTGAGACATTTGGACAATGCAAAGAGAAGGGCAACATGTTTGTTAAAAAGGGAAAGCTAGAAGAAGCTGTCCATTGCTACACACAATGCATTGAGCTTGATCCCAGCAAAGTAGCAGTTTACACTAACAGAGCTCTTTGCTATCTTAGAATGGAAAAGTACAATCTTGCTGAGGAAGATGCTTCAAAGGCCCTTGATTTACAAGAAGACAATGTTAAAGCACTGTATCGTTGTGCACTAGCTAGAAAGGCATTACAGAAGTACGAAGAAGCTGCTAAGGACCTTGTCAACTTAATTAAGATTGAACCATCCAACAGTGCAGGCAAAAAAGAATTAGATATTGTGTTGAATCTTTGTCGAGAGCAACGAAAGGCCAAGCAGAAGGCTGCAAGCAATTCCCAGGTGAATGCAAGTGAAGTGAAGACCAGTGAAAAGCAAAATGATAGTAAGGTTGAAACCAGCAAGAAAACAAGACGGCGGGTGCAGATTGAGGAAGTCAATGGAGAAGAGGATTCTACTCAAGTACCAAGCAGTCCATCAACAGACCCTAAAAAGCCTCGTGATTCTTCACCCAAAGTAAAAAAGAACGACATCAAACCACAAGACTCGAGCAAGAACACCAAGGAAGGAGCAAAAGTGAAAACATCACCGTCTAAAGACTACAAGAAAAAGAATGTTAAGCTTCATAAGGCATCAGCGTTCGACTTCTACCAAGCCTGGAACTCAGTAAAACAAAAAGACCTTTCCTCTTATGCAGATATACTTAGACAGCTGAAGCCTGCTATGTTACCTAAAGTGCTAAGTAACAAGCTGGATGCTGACATCCTGCGTTGTATCATTGGTGCAATTACTGAACACTTGTTCCCCAACGGTGAAGAGAAGTTTTCGTTTGAAATACTGCAACACATGTGCAAGGCTCAGCGGTTTAATATGGTGATGATGTTCCTTGACAGCAACGATACACGAGCTATTCGCGATGTCTTCGCTAAACTGGCTACAACACGAACCAAGAATGAATTTGTAGATATCGACGTATTTAACTGTACTGTGAAAAAGTACAATCTTTGATCGACACCAACTTTGGGCAACATCACAGGAGATCCGTTTTTCAGACCTTGTTCCGGAAACGCCCTCGCCTGGCATCCAACCGCAAGCCACAAGCTGCTGGCGACTCTAGGATAGACTGTAAGACAGTCCCTAAACTACAACTCCCCCTATTGCTGAGTTGCAACTGACATCACGGCAGCCATCTTGGATGAACTTCAACAAAACATTTCTCATTAGTGCTGTTTGTTCATCCAACATGGCTGCCGTGTCTTTATCTTTTCATTTTCAAGGGATTGATTGCAACCCAGAAATTCTCGGCGGAATTTCGCGAAAAAATACGGACTGTTTTGCAGTCAAAGGTCCATTTCAGACGTCGCATCTCACATGTGCCGAATGCAATTAAAACAAAAGATAATTAGGCGGTGTTCTTTGATCTAATTACATTTGGCACATGTGAGATGCGACGTCTGAACCGAGCCCCGTGGGACGTGATTGTCGGTAAGTACTTGGTGTATGCAGCACTAACTGTATCAATATATATATATATATGTTTCCTACTGTATTCTAAGATATATATATATATATATATATATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13414	TPR_11	TPR repeat	Repeat	Interproscan
PF13877	RPAP3_C	Potential Monad-binding region of RPAP3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR025986	Domain	RNA-polymerase II-associated protein 3-like, C-terminal domain	Interproscan
IPR051982	Family	Ciliary Assembly and Mitochondrial Import	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45984	RNA (RNA) POLYMERASE II ASSOCIATED PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006626	Biological Process	protein targeting to mitochondrion	Interproscan
GO:0031072	Molecular Function	heat shock protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-