Detailed information of gene24186.t1 in Actinoscyphia liui

Genomic Location: chr7:8304882...8327980
NR annotation: XP_028515605.1, DNA mismatch repair protein Msh6 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
E1BYJ2DNA mismatch repair protein Msh6 OS=Gallus gallus OX=9031 GN=MSH6 PE=3 SV=2
P52701DNA mismatch repair protein Msh6 OS=Homo sapiens OX=9606 GN=MSH6 PE=1 SV=2
P54276DNA mismatch repair protein Msh6 OS=Mus musculus OX=10090 GN=Msh6 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05188MutS_IIMutS domain IIDomainInterproscan
PF05190MutS_IVMutS family domain IVDomainInterproscan
PF01624MutS_IMutS domain IDomainInterproscan
PF00855PWWPPWWP domainDomainInterproscan
PF00488MutS_VMutS domain VDomainInterproscan
PF05192MutS_IIIMutS domain IIIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000313DomainPWWP domainInterproscan
IPR007860DomainDNA mismatch repair protein MutS, connector domainInterproscan
IPR007861DomainDNA mismatch repair protein MutS, clampInterproscan
IPR007696DomainDNA mismatch repair protein MutS, coreInterproscan
IPR016151Homologous_superfamilyDNA mismatch repair protein MutS, N-terminalInterproscan
IPR000432DomainDNA mismatch repair protein MutS, C-terminalInterproscan
IPR036678Homologous_superfamilyMutS, connector domain superfamilyInterproscan
IPR036187Homologous_superfamilyDNA mismatch repair protein MutS, core domain superfamilyInterproscan
IPR007695DomainDNA mismatch repair protein MutS-like, N-terminalInterproscan
IPR017261FamilyDNA mismatch repair protein MutS/MSHInterproscan
IPR045076FamilyDNA mismatch repair MutS familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006298Biological Processmismatch repairInterproscan
GO:0030983Molecular Functionmismatched DNA bindingInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0032301Cellular ComponentMutSalpha complexInterproscan
GO:0140664Molecular FunctionATP-dependent DNA damage sensor activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08737MSH6; DNA mismatch repair protein MSH6-DNA repair and recombination proteinsko03400deepkoala

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