Gene detail

Detailed information of gene24027.t2 in Actinoscyphia liui

Genomic Location: chr7:6432948...6437639
NR annotation: XP_031569735.1, TATA box-binding protein-associated factor RNA polymerase I subunit A-like, partial [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene24027.t2

ATGGCGGGCGCCATGGAATATTGGATTCACGCGCATAAGAGCACAAAAATTGACTTCACTCAGCCTTATGTGTATGATTCGTGCATCTTCCATCAGCAGTGCTATGAATATTGGACATATTTAGGATTTAGAGCACAGCATATTGATTATTTGACAAGATTACTACTGGATAGTTTGCTCAAGCATGATTTTACTAAGTCTGCGCACTGTATATCAGCTTTAAGTGGCAGCATGAAATTTGTTTCTGAGTTGTTGTGGAGGACAGGATGTCAAGTTTTGATGTCACTCCATGCAAACCACGCTCGCAGGGTACAATTCTTTAAGTACATCTTCATGTTATGTTTTCCTTATCAAGAGGAAATTCTTCTAGACTTTGCCATGTATCTAGTCAAAGAACATAAAAACTTAACAGAGGCCAGTGAACTATTAAATGGACAAGCCACCAAAAAGCCTTTAAGTGATAACAAACTTATACAGGCCTATATGGGAATGTTTGAGCATGTCTTATGGAAAATTAACTTCAAGAAACAAAGACTTTTGCACAGAAACATAGACATGGATGTAGAGGATAACGACATACCGAAGCAGAGTAGCAACATGTACCACGGAAACAAGGCTCTTCGATTCTTCTGTAATTTATTCAACAGTGAAGGAGTTTGGGATATTTTTGTTCTAAGGCAAGTAGAGTTATTAATGTTCTTTGAAAGGAATGATGAAGCACAACGGATATTGGAAAGATACAGAGAAAAGAACCCAGAAAATCCTAATGCACACAGATATTTGTATTATTTCCATAAGAAGCAAGACTCTCCAAAGGCCACTCTACTGTCTGTTCTGGAAGATCTATTTGTTGTGAATCCTACCTCTGAATTGGTTCAAGAATATCACGAGATGGTTATGGATAATGACAGTCTGTCAGGATACCAGAAGAATATTTGTACTTTGGTTGGCATTTTATTCAACAAACTTGATTATCATTCTTGCAAAAACAATTTGGCAGGATGGAAGACATTAGCATATATCTTAGATATATATTACCATAGCAACCCGACCAATAAAGATATTAACAACAAAGTCAAAGAGTGCTGGGATGAGCGATCTGACTGGTGGCCTGGGTACCATTTCTCTGTCTCCATGGTAACTAGGACGTTATGTAAGAACGACTTTAGTGTCATCATTGAGAAGGCAAAGGTTGCCAAATATCTTACCTCTGAAGAACATGCATTTGTTAAGGGTGTGGAAGCCCTTGAAGACAGAAAAGGGGAGGAAATGCAGGTGGATGCTAACTGCAGTGTTTCAGATAGTGATACAATCAAGTTGCACAGAAAGTCGAAAAGGAAAGTACAAAATACACAGCGAAATAGTCCCAGGAAAAAGATCAGAGAAATATAACTATCTGTGAGACTGGGATAGCGATAGGACAACAGTGGAGGCACGCCTAACAACAGTGGAATTACGCCTAACAATAGTAGAAATATGCCTAACAACGCTTGGACCATGCTTAACAACAGTGGAACCACGCCTAACAAAGTGGACAAGAATGAGTTTGATAAGCTGTTTACAACATGAACGACTCAACATTACTAATAAAATGCATTACATAGAACTTGTTACGAACAAGGGTGGCTTAGTTGGTTAGTGCACGGCCTTCACAGTTCAACGTCGTCTAATTTCCTGCTCCGTGGAGCTCAGTCATTGTAACTTTATATACTCATAGGACGGAGCACTGATGGAGGGAGGGGCGCCGCTCCATCTCTCTGGAAGATCACTTTCGAACTGGTGAAGGGGTACGGGCATTAAATATCATCCTTTAAATATCAATTGTTTTGCAAGAGTTTGTAAATTTTGGCTTCATGTTCTCTACAAGAGTTCTCGACTCCCCAGAAAGCGTCTAACTTCTTGTAAACCTTGTCAGGAAGGTTTGGGTTGTTTAGAGCTGCACACATGTTACACGTCCATAATACAGACAAAGGGTACGCTATCTTGTATTTAGTTTTCCACTGGAAGTACTCGTTGTATGCAGTATCATTGGCGTTTAAATATTCCAGATAATCAGCTAACGCTTTCATAGAAGGGAAGTCCAAGACATTGATATAGGACCCTGGTATTGCTACTTTGGAATCGTAATTTGAGCCGCCAAGGACCACTGGTATTATATCATGATGCAGCGGAGTGAACCAGTATTTCTCTGTGACGTAATCTGTACACATAGCATTTTCAAATGAAAGATAAAATTTAAATCGCCTGAGGAGACGATCGCAGTCACGTGACCCACGACTGCAATGATTGGTTGTTTGGTTAAACTTTTTTGCGCATGCGCCAAACACCGTTACATTCACATAAAACGAGAGCCTTTGAACAACGTCGTCACGAAATTGTCCACAATTGCCGACCATCCAAGCTATGAATTTGTCTTTCCCTTCGGCGTAGTTTCTGGGTTCGGCTAACTTCGTGGCTTCTTCGGGCTCTAGTCGGCGGTAATAATTATAAGGCACGAAGAAATCCGAGTCTCTACGATAGCTCATCGTCCAGTTAAAGAAGTTGTTGTACATAGTTAGGTTATGGTAAGTAAATACCGGGTTTTCATGAGTAAAATAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14929	TAF1_subA	TAF RNA Polymerase I subunit A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039495	Family	TATA box-binding protein-associated factor RNA polymerase I subunit A	Interproscan
IPR052669	Family	SL1/TIF-IB Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32122	TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000120	Cellular Component	RNA polymerase I transcription regulator complex	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15212	TAF1A, SL1; TATA box-binding protein-associated factor RNA polymerase I subunit A	-	Transcription machinery	ko03021	deepkoala