Detailed information of gene23916.t1 in Actinoscyphia liui

Genomic Location: chr7:4883137...4890253
NR annotation: XP_020895417.1, 60S ribosomal export protein NMD3 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6GNS360S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1
Q6P2Z660S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1
Q5BLF060S ribosomal export protein NMD3 OS=Danio rerio OX=7955 GN=nmd3 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21192NMD3_OBNMD3 OB-fold domainDomainInterproscan
PF21193NMD_SH3NMD3 SH3 domainDomainInterproscan
PF04981NMD3NMD3 family FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039768FamilyRibosomal export protein Nmd3Interproscan
IPR048898Domain60S ribosomal export protein NMD3, OB-fold domainInterproscan
IPR048899Domain60S ribosomal export protein NMD3, SH3 domainInterproscan
IPR007064DomainNmd3, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000055Biological Processribosomal large subunit export from nucleusInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0043023Molecular Functionribosomal large subunit bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07562NMD3; 60S ribosomal export protein NMD3-Ribosome biogenesisko03009deepkoala

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