Detailed information of gene23884.t1 in Actinoscyphia liui

Genomic Location: chr7:4428976...4457160
NR annotation: XP_020895418.1, splicing factor 1 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q15637Splicing factor 1 OS=Homo sapiens OX=9606 GN=SF1 PE=1 SV=4
Q64213Splicing factor 1 OS=Mus musculus OX=10090 GN=Sf1 PE=1 SV=6
Q8NIW7Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=bbp-1 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16275SF1-HHSplicing factor 1 helix-hairpin domainDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00013KH_1KH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR032570DomainSplicing factor 1, helix-hairpin domainInterproscan
IPR004087DomainK Homology domainInterproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR045071FamilyKH domain-containing BBP-likeInterproscan
IPR047086Homologous_superfamilySplicing factor 1, helix-hairpin domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11208RNA-BINDING PROTEIN RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0048024Biological Processregulation of mRNA splicing, via spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13095SF1; splicing factor 1-Spliceosomeko03041deepkoala

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