Detailed information of gene23559.t1 in Actinoscyphia liui

Genomic Location: chr6:46627852...46637304
NR annotation: XP_028512466.1, hemicentin-1 isoform X2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9Z2I4Roundabout homolog 3 OS=Mus musculus OX=10090 GN=Robo3 PE=1 SV=3
A2AJ76Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
Q09147Fibroblast growth factor receptor homolog 2 OS=Drosophila melanogaster OX=7227 GN=btl PE=2 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF01390SEASEA domainFamilyInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR036364Homologous_superfamilySEA domain superfamilyInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR000082DomainSEA domainInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR051170FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12231CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan

TOP