| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| gene23384.t1 | POLYCOMB GROUP PROTEIN | chr6 | 44409619 | 44421454 | - |
| CDS | |||||
| gene23384.t1 | |||||
| Transcript |
| gene23384.t1 |
| Protein |
| gene23384.t1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|PHD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00536 | SAM_1 | SAM domain (Sterile alpha motif) | Domain | Interproscan |
| PF00538 | Linker_histone | linker histone H1 and H5 family | Domain | Interproscan |
| PF00628 | PHD | PHD-finger | Domain | Interproscan |
| PF21524 | SAMD1_WH | SAM domain-containing protein 1, WH domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001660 | Domain | Sterile alpha motif domain | Interproscan |
| IPR001965 | Domain | Zinc finger, PHD-type | Interproscan |
| IPR005818 | Domain | Linker histone H1/H5, domain H15 | Interproscan |
| IPR011011 | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR013761 | Homologous_superfamily | Sterile alpha motif/pointed domain superfamily | Interproscan |
| IPR019787 | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR048589 | Domain | SAM domain-containing protein 1-like, WH domain | Interproscan |
| IPR050548 | Family | Polycomb group and chromatin remodeling factors | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12247 | POLYCOMB GROUP PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000786 | Cellular Component | nucleosome | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003682 | Molecular Function | chromatin binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006334 | Biological Process | nucleosome assembly | Interproscan |
| GO:0042393 | Molecular Function | histone binding | Interproscan |
| GO:0045892 | Biological Process | negative regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
