Detailed information of gene21952.t1 in Actinoscyphia liui Gene info
Gene IDAnnotationChromosomeStartEndStrand
gene21952.t1SRCR DOMAIN-CONTAINING PROTEINchr61969103119756144-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00431CUBCUB domainDomainInterproscan
PF00530SRCRScavenger receptor cysteine-rich domainDomainInterproscan
PF00629MAMMAM domain, meprin/A5/muDomainInterproscan
PF01822WSCWSC domainDomainInterproscan
PF04564U-boxU-box domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000859DomainCUB domainInterproscan
IPR000998DomainMAM domainInterproscan
IPR001190DomainSRCR domainInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR002889DomainCarbohydrate-binding WSCInterproscan
IPR003613DomainU-box domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR017448DomainSRCR-like domainInterproscan
IPR035914Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR036772Homologous_superfamilySRCR-like domain superfamilyInterproscan
IPR050686FamilySRCR-S1 Scavenger ReceptorInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR48071SRCR DOMAIN-CONTAINING PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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