Gene detail

Detailed information of gene21666.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene21666.t1	RIBOSOMAL PROTEIN L13	chr6	14133520	14135794	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene21666.t1

GTTTATAAAATTTTGAAATTTTGAAGGTTGATCTGTGCTGTTTTCAACAGATGAAGAGCTGAGGGCAGTGTTTTATAAAATGGCATTCACTAATCGTGCCTCACAGAGCTTTCTAACACACGCAAGACTATGGTATTTAGTGGACGCGAGAGACCAAGTTAATGGCCGTTTAGCCGGGTACATAGGTCAGATCCTACAAGGCAAGACCAAGCCAATCTACCACCATGCAATCGATGTAGGAGACTATGTCGTAGTAGTTAATACTAAAGATATTGTTTTAACCGGGGCAAAGTGGAAAGATAAGCTATACCGTCATCACACAGGGTACCCAAGCGGGCTAAAAGAGATCAAGGCAAAGGACTTGCATAAGAAGGATTCAACACGTGTATTATGGAGAGCAGTGAATGGCATGCTACCAAAGAACAATCTGAGGCCTGTTTGGATGAAGAGGCTGTATCTGTTTGAAGATGAGAACCATCCCTACGCAGAGAATATTTTTGCAAGGTTGGAATCACCTGCGTCCATTCCTAAGAGACTACACGAGTACACGCCTGAAGAGATAGCGAATTATCCTAAACTGTTTTGATGGTCAATACACAAGAAATTGAAAATAAAAACTGCATTCAAGATCCTTTTCATAGGAACAAACAAGCAAAACTGGTTTCTGTCAGCTAGCTATAGTTATCAGGGCTTGAACTTCTGTGAAACATGTACTAGCAAATTTTTGCTAGAATTTGATCAGAGATCACTTGTGTTGTTCCTTCAGGGACCACTTCAAAAGTGGAACAATGAGTATGGTTGTGTTGGTGTGGCGTTATGCCTCGAACTGAGACCCTCTTAGAAGTCATACCATACTCTATTATATTTGTCATGGTTTAATTCACATAAGGCAAGGTCACCCTAGAAGACTCATACACTATCTGCTTGCTCTCCTGAACCATGCATTAGGGCTGAGGTCAAAACAATAGTCCTTAGTAGGGACCCAATTTTATTGGTTTTGGTGGTGGGTACCGGGAAATCCCCCTCATGGGTTAGTTGAAGTCCTTGATAGCGGTGTTTGTCCAAATACCTTGAAACAGACAGTAGATTCATTGCTGCAATTTGGCTTTCAGTTTTGGATTACACTTTCAGAGGTCCCCACCCTGGTAAATGGGGTCCAAGGATAATTGTTTTGACCTCATCCCTCTACCCCCTCCCCCCCCCAAAAAAAAATATTATTATCCCCTCAGAGGACCCTTGTACAATAAAGACCCTCTACCATGTAAACAGGGCCTTAGTGATGATCTGGCTTATGGGCTCCTGATCTGGTTTACAGTGAACTCTCTCTAAGGTGGACACCTTCGGGACCAAATTTACTGTCTGCCTTAGAGAGGTGTCTGCCTTAAGAGAGAGTTCATGTAACCTGATATCCAAACCTCAAAACTGAAAGCAGTGCTTTATTACAGTGTACAACGTTTGTGAGTTAACCTTAACAAAACTCGTTTGTGTCACTTGTTATTTTACTTTGTGACAATATGAAAACTGACCAGACGTACCTGTCATCAGATTGCGCCTGTTATAAAATTTCGTAAACATCAGGTGTCCACTTTGAGAGGTTTTTAAAAGGTATTTTGAACCAAATTGAAAAAAAGAAAGTGTCCGCTGTCCAGCTTAGAGAGGTGTCCGCCTTAGAGAGACTTCAGTTACAGAGAAACAAGTGGAATTCGGCAGGGACCAAATTTGCTGTCTGCCTCAGACAGGTGTCTGCCTTAGAGAGGTGCCCGCTTAGAGAGAGTCGACTGTATACTGAAACAATTAGTATTCAAGTACCAATGATATGACATGTCAAACTGAAATAACAACACAGCTGTACACTTACTGTATTTCAAAACCAGATCTTGATCAAAAGGCATAAAGCCTACATGACCAGCCTGAAAGGGAGCATGGTAGAAATTGCTGAAACTGTAGAACCACAAATATCAACACAACGATTTACTATAACCATTGAAAATTGTTGCTCAAATTGAAAAGTGAGCAAATGACTACATTACTGAAAACTGCCCTTTTGGTCTAATTACTTAGGCTTGGGGCCACTTGCCCAACAACCTTTTTTTAATAGGTGTATGTCACAATAAGTTGATACTTTATTAAATAATATTAAAACTTAAATGCTTTTATTAGATCAGCAGAAAGCTATTTTTCATGAAAAAAAAAAGAAAACCCTTTGGCAAAGATTATTCATCTTCAGGAACCCAGGGGTATTATTCTGTCGCTCTTTTCTCGCTTGCCAAAAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00572	Ribosomal_L13	Ribosomal protein L13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005822	Family	Large ribosomal subunit protein uL13	Interproscan
IPR005823	Family	Large ribosomal subunit protein uL13, bacterial-type	Interproscan
IPR036899	Homologous_superfamily	Large ribosomal subunit protein uL13 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11545	RIBOSOMAL PROTEIN L13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005762	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-