Detailed information of gene21377.t1 in Actinoscyphia liui

Genomic Location: chr6:7577010...7591948
NR annotation: XP_031560687.1, pre-mRNA-splicing factor RBM22-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZM16Pre-mRNA-splicing factor RBM22 OS=Gallus gallus OX=9031 GN=RBM22 PE=2 SV=1
Q9NW64Pre-mRNA-splicing factor RBM22 OS=Homo sapiens OX=9606 GN=RBM22 PE=1 SV=1
Q4R4J1Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis OX=9541 GN=RBM22 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF21369STL11_NSTL11, N-terminalDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR048995DomainSTL11/RBM22-like, N-terminal domainInterproscan
IPR039171FamilyPre-mRNA-splicing factor Cwc2/Slt11Interproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14089PRE-MRNA-SPLICING FACTOR RBM22Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0036002Molecular Functionpre-mRNA bindingInterproscan
GO:0071006Cellular ComponentU2-type catalytic step 1 spliceosomeInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12872RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11-Spliceosomeko03041deepkoala

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