Gene detail

Detailed information of gene20214.t1 in Actinoscyphia liui

Genomic Location: chr5:42995416...43002053
NR annotation: XP_020896847.1, uncharacterized protein LOC110235706 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene20214.t1

ATGTCAGAAGATAGACAAGAACTTATCCTTCTCGCCACCTCGGACATTGGTGTCAGTGACAACTCTTCGCCGTGCTCGCAAGCAGCCAGTACTAGTGTCTTGACCAAGTTTCTTGCAGGTAGCAACGCCTCTGTAACAAGCACTCCTAACACGTTCATAGTGTATATACCAGCGTTTAGGAAGATTGAGCCCAAGCCTGGGCTTGAGTTGAAAGATGAGGAAGATGTGGAAGAGAATGAGCTAATAGACAAAGATGCCAAATCTTCTGTTGGGAGGTTTCTTGCGATAAATGCCACTAAAAGAGGAGTAAAGACATGTCCTGTTTGTCAAAAGAAGATAGGATACAGAGCCAAACAATGCAAGCACTGTAGTCCATCAAAGATCAGGAACCCAAGAAAACCACGATTACTCCATGTGAAACCTGCACTGTCTTTAATGGCACCCACAATGGTAGAAGCTAGTCTCAATAGGATTAAACCACAGACTACACAGGGTTCCCAAGAAAGTACCCAAGAGACCATGCAAGGGGGCTTGTATTCTAATGATGGGGTGGACGAAACACATGAAGAACCCATTGTATCTACTCAGGAGGGAGGGGGACAGCAGTTTGAGATGGTAGTAACAGCACAGGGTGACCAACAGTCACTTGATGAGCCGGCTGGATTTCAGGGTGCACTCATGAGCACTCACACCCAACAACAGCTTGGATCAGAAAATACTGTAGGTCAGCAGCTGCTTGATTGTGATTCTATAAATCAACAAGAGCCGCTTATAGTACCTTCAGAAGGCCAACACGAACTGGATTCATTGAAACCACAGGAAGACCAAAACGAACTTGGTACTTCAGTGAGAAATATCCTTGATCAGACGGACAGACAACAAATAATTCTAGACAATGCTGTGGTGAGTAATGTTACAGAGGTATCTACTACTGGCGACAGCACACAGAAAATTGATGAAGAGACTGGAAATCAGGAAGTCTTGGAGTCTTTGGCTGACATATCAGCCAAAATTACACAAAACATTGACAACCAAGCAGCAAGTACCTTACAGGATCTAATCTGTGGTCTGTTGGCACAGAATCAGGGGGTCAATATACCAGCCAACCAGGCACAACCAAAAGAGAGTGAAGAGAGCATTGAGGAGTCAGCCTGTGTTGATATTCAAAGTGAATCTGTCAAATCACAAACTTCTGAAGAGACAGATTTAAGGAATAAAGATCCTAGTGAGGCAATAAACAAGGAGAAATCACCAGCGATATCAGAGACCTCATTTGATGCCAATTCCGTGGCTTTGTTCCTAGGAGAAATGGCTCAACGAAATAATGGGAAGAAGAGGAAAATGAGCCTCTCTAAAACCACTGACAGTGACACAAAAGTTGTAACACTTATACCAGGTGTAAATCAAAAGTGTTTTATATTAACTGGAAATGATGCCAAAGCTGCTAAGTTTAGAAAGATTCAACCCAAGGATATTGGTAGTGTGCAAGAAGAGACAGCTGTCTGTGATAGTGACAAGGAAACAAATAAAGACATAATCAATGAAATCAAAGGAGAAGCACAGTACAGGATCATGAATGGAAATGCTACAAGGCGTGGTGTTATGTTGTGTACCAAATGCAACAAAATGATTGGCTGTAGGTCTAAAATCTGCAAACACTGTAAAACCAACGTAACTGAAAGCCCATCCCGTCAAGTTCCCATTAAGACTTTTAAACAAGCTGTCAAGCTCTGCCTACCAGAGGATGTAGGCATACAGATTTTCTCTGTTAGAAAATGCAAAACAGGCCCAGAGCTGAGATGTTTTGTACAATTTCAAGAGAAAGGTAATGACGACAAGTCCAGTAGCAGTAGTAACAGTAAGTATTCCTGTGATTACCCTCTATGTGTGACTGCAAAAGAACTAGGTAACAATGACTATATGTGTGAGCATGCCAAGGTTTGCTGTATTTCTGGTAATCCCTTGAAAGCCAGGCTTCCAAAGTTAGATTTTGAAACACTGCAGACAATGCCCTATGGTTCAGACATGAAGGAAGCAGTGAATAAACTATACTCACAATGTCTGTGTAAAGGGGTTGGATTGGTGCAGTATGTATCATGCCGCACCCTAGCTGTTGTTGAGCACATGAATGGGGAATCAAGCGATCCCTTAGGAGCAGATACAATCTCTTTTGCACATGTCAGATTTGAGAACGTCAAGGGACTGGGGTGCTTCCAAAGGCAGGTTTTCTGTAGTGGGAGATCTTGTTTGGCTTGGAACTTTCTGTCTAGTGACTCCCATCTGGCAGCCATGAAGTCTTGTAGCTGTGTTCACTATGCTGCTGCCCTGTGGGCCATTGCATCTGATGCTGAATTACACAAAGATTTAGGGAAATATTTAGATGCCTTTGTTGCTCACACTAAGAAAGGAAATTATTAA

Transcript

gene20214.t1

CGTTTATAGGCGTGTTTAACCTAAAAAATACGGTAAAATGGTAAACGAAACTTAAGGAAATCAAGAACAAACACCTTACATCGGTACAGTGTTGACAACAGCAGAAAATAAATCGCAACGAAGAATTACTTCAGCAAAGAGCAGTCCAACACCGTCCAGTACCACTGGACTCGGTCATCAGCTAAATGTAGTTACAACTCTCGTTTGGAAATACAGTACATGAACCGCTGGCTTTCCTCAAGTTTTCTTAAAAAGATGTATTTTTGGTGTCTAAAGCTTATTTAGTGTGAAACAACGGATCCGAAACAATATGTCAGAAGATAGACAAGAACTTATCCTTCTCGCCACCTCGGACATTGGTGTCAGTGACAACTCTTCGCCGTGCTCGCAAGCAGCCAGTACTAGTGTCTTGACCAAGTTTCTTGCAGGTAGCAACGCCTCTGTAACAAGCACTCCTAACACGTTCATAGTGTATATACCAGCGTTTAGGAAGATTGAGCCCAAGCCTGGGCTTGAGTTGAAAGATGAGGAAGATGTGGAAGAGAATGAGCTAATAGACAAAGATGCCAAATCTTCTGTTGGGAGGTTTCTTGCGATAAATGCCACTAAAAGAGGAGTAAAGACATGTCCTGTTTGTCAAAAGAAGATAGGATACAGAGCCAAACAATGCAAGCACTGTAGTCCATCAAAGATCAGGAACCCAAGAAAACCACGATTACTCCATGTGAAACCTGCACTGTCTTTAATGGCACCCACAATGGTAGAAGCTAGTCTCAATAGGATTAAACCACAGACTACACAGGGTTCCCAAGAAAGTACCCAAGAGACCATGCAAGGGGGCTTGTATTCTAATGATGGGGTGGACGAAACACATGAAGAACCCATTGTATCTACTCAGGAGGGAGGGGGACAGCAGTTTGAGATGGTAGTAACAGCACAGGGTGACCAACAGTCACTTGATGAGCCGGCTGGATTTCAGGGTGCACTCATGAGCACTCACACCCAACAACAGCTTGGATCAGAAAATACTGTAGGTCAGCAGCTGCTTGATTGTGATTCTATAAATCAACAAGAGCCGCTTATAGTACCTTCAGAAGGCCAACACGAACTGGATTCATTGAAACCACAGGAAGACCAAAACGAACTTGGTACTTCAGTGAGAAATATCCTTGATCAGACGGACAGACAACAAATAATTCTAGACAATGCTGTGGTGAGTAATGTTACAGAGGTATCTACTACTGGCGACAGCACACAGAAAATTGATGAAGAGACTGGAAATCAGGAAGTCTTGGAGTCTTTGGCTGACATATCAGCCAAAATTACACAAAACATTGACAACCAAGCAGCAAGTACCTTACAGGATCTAATCTGTGGTCTGTTGGCACAGAATCAGGGGGTCAATATACCAGCCAACCAGGCACAACCAAAAGAGAGTGAAGAGAGCATTGAGGAGTCAGCCTGTGTTGATATTCAAAGTGAATCTGTCAAATCACAAACTTCTGAAGAGACAGATTTAAGGAATAAAGATCCTAGTGAGGCAATAAACAAGGAGAAATCACCAGCGATATCAGAGACCTCATTTGATGCCAATTCCGTGGCTTTGTTCCTAGGAGAAATGGCTCAACGAAATAATGGGAAGAAGAGGAAAATGAGCCTCTCTAAAACCACTGACAGTGACACAAAAGTTGTAACACTTATACCAGGTGTAAATCAAAAGTGTTTTATATTAACTGGAAATGATGCCAAAGCTGCTAAGTTTAGAAAGATTCAACCCAAGGATATTGGTAGTGTGCAAGAAGAGACAGCTGTCTGTGATAGTGACAAGGAAACAAATAAAGACATAATCAATGAAATCAAAGGAGAAGCACAGTACAGGATCATGAATGGAAATGCTACAAGGCGTGGTGTTATGTTGTGTACCAAATGCAACAAAATGATTGGCTGTAGGTCTAAAATCTGCAAACACTGTAAAACCAACGTAACTGAAAGCCCATCCCGTCAAGTTCCCATTAAGACTTTTAAACAAGCTGTCAAGCTCTGCCTACCAGAGGATGTAGGCATACAGATTTTCTCTGTTAGAAAATGCAAAACAGGCCCAGAGCTGAGATGTTTTGTACAATTTCAAGAGAAAGGTAATGACGACAAGTCCAGTAGCAGTAGTAACAGTAAGTATTCCTGTGATTACCCTCTATGTGTGACTGCAAAAGAACTAGGTAACAATGACTATATGTGTGAGCATGCCAAGGTTTGCTGTATTTCTGGTAATCCCTTGAAAGCCAGGCTTCCAAAGTTAGATTTTGAAACACTGCAGACAATGCCCTATGGTTCAGACATGAAGGAAGCAGTGAATAAACTATACTCACAATGTCTGTGTAAAGGGGTTGGATTGGTGCAGTATGTATCATGCCGCACCCTAGCTGTTGTTGAGCACATGAATGGGGAATCAAGCGATCCCTTAGGAGCAGATACAATCTCTTTTGCACATGTCAGATTTGAGAACGTCAAGGGACTGGGGTGCTTCCAAAGGCAGGTTTTCTGTAGTGGGAGATCTTGTTTGGCTTGGAACTTTCTGTCTAGTGACTCCCATCTGGCAGCCATGAAGTCTTGTAGCTGTGTTCACTATGCTGCTGCCCTGTGGGCCATTGCATCTGATGCTGAATTACACAAAGATTTAGGGAAATATTTAGATGCCTTTGTTGCTCACACTAAGAAAGGAAATTATTAATAACACTGACAGTACATCATAGAGAAGATTTCGTATGACTGTGAAAAACACTGAGCCACACTGTGAAGTGCCGTGCTATGCCCCCCCGCCCTGGGGGCGGGGGGGCATGCAAGAACAATGTTAATAACCACTGATCAAATTCTAGCTTCTCCTTGAAGATCTCTTGATTTCAAAGGAGAATTCAGGATTTGATCAGAGAGACCACTTACTCTGTTCTTGCATGGACCCTTTAATTTGTAACCCAAGCAAAATCTGATAGTGATGCCATAAGTGCCCATCACTTTTGCTTGATGTTTGTTCCTGTTAAACCTGCCCTCTGTGTGGATGTACTACCCTAAAGGCCGGTTTAGACTATCAAAATTTCTTTGATCAAAGTAAGTTATCTCTTTGATCAAACTCTTTGACATGTATAAACAGACTTTGCAAGATCAAAGAAAATAGGACGTGTTCTATTCACATCAAAGTGTTTGATCAAATGTTTGAACAGCGTTTACATTGTCAAACAGTTTGATAAAAGTATACTTTTATCAAAGAAACTTTGATAGTGTAAACGGGGCTTAACTGACAAATTGTAAAGTGCAACTATTGCGTGCAACACCGGAATTACACCATGTATCCATCCATCTCTGCAAAAGTTGCAAGAAAATTTGCAATGTGTGACACCACCAAAAAATCTTGTTGTGGACAACAGTTGCATCATGTGTGTGTCCAAGCCTTAATGAAATGTAATATAAAGACCCTGAATAGAGGCTTTGCACGGTCACGTGTCGGCAGCCATGACAGGGGCCGAGGCTACTTCATGTAAGACTCCACACAATGGCACTATTATGTTCGTTCTATTGTTTTTACATAGTTAACAATATGTAATATAATAGTGCCAATTCATGAGGTCTTACATGAAGTACCAAACCGCGACAGGAATAATAAAATCTCTTTCCCCTGAGGATTGGATTCTTTCTAATGCAAAACGATTTTATTGTTCCTGCCTCCTGTCATGGCCGCTGACACGTGACCGTGCAAAGCCTCTATAGAAGTTATTACTCCTTCAAGTTTACATTGTTCTTTTGCTCTTTGTTGTTCATAATTTAGTAATGAAAGCAAAATGTTTCACAATTAATGTTGGGGTGACAGTGTTTATACGGTATTCAGTTCATTGCATAGATGTTATGGTTAAGTTATCAGAAAGCAAAGTATAGAAAATATTGTAATCTGGACATTTTACACAGTCAAGAGAGTATAAGTAAGAGAGTGCATCGCTACCCTATGATAATCCCTCTGTTATTACTATTTTTAGATTTTGTTAGAGTACAAACACTAAAACCGTGCAATGTTTTGCACTAATTAGTACTAAATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR026049	Family	Uncharacterised protein C2orf42	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13518	PUTATIVE TREBLE-CLEF ZINC-FINGER C2ORF42 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10683	BARD1; BRCA1-associated RING domain protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala