Detailed information of gene20158.t1 in Actinoscyphia liui

Genomic Location: chr5:42089319...42093168
NR annotation: XP_020892264.1, TNF receptor-associated factor 3 isoform X2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6DJN2TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1
P70191TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1
Q60803TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF21355TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR012227FamilyTNF receptor-associated factor TRAF, metazoaInterproscan
IPR002083DomainMATH/TRAF domainInterproscan
IPR049342DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03174TRAF3; TNF receptor-associated factor 3-Alcoholic liver diseaseko04936deepkoala

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