Gene detail

Detailed information of gene19897.t1 in Actinoscyphia liui

Genomic Location: chr5:36922486...36930239
NR annotation: XP_031569249.1, leucine-zipper-like transcriptional regulator 1 homolog [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene19897.t1

ATGAATTCGTTGGGATGCCCAAGCCCAGAGCAGGAGGATGGATTGCAGATCTATGCAGTGCTTAATTTACACGAAACCCCTAGGAAACTTCTTAGTAGAGACAAAAGGAATTTTTACTGCCATTTTGCCCTACCCCTCCCTAAGCAAGTTGTTGTCTTTGCTGTGGGGGAGTGGGATGGTAGTCTTGGCTCCAACAGTGTTACTGTTGAGGTGTCTTTGGACTCGGAACATCCACCAAAGAAGATTGGCACCCTGTGCAGAGATACACGAGCACTGTGTTGGGAGAGTGATTGGGGAAAGACTTTCATTGAACAAAGTATAGAGTTGGAAGAAGAGGACAGAATGGCCAAACTTGTAGTAAGTGCTGACATGAATATCAAGTTAGAAGAAAAAGAAAGTAAAAAGATAAAGAAGTCACCATTTTATGGAACTTTGAACTGCAAGAAAGAAGTACAAAAAACTCCCAAAACCTCTGCCAGGAAGAATGCAAGAGCTAATGGAGTCCTTACTCCACAAAATAGGAATACCAAACTTGAGGATTTCTGGAGCAATGCTGGCAGTGAAGAGAACAGTCCTCAGTTTGTACAAGGGACACCACTTGCACCCCCACCTCTTAGTGAAAGTAGGAGGAAAAGAACTCCTAGATCTTCAAAAGGCACAGTTCCATCAGGGAAAAGAAGAAAGTCACTGCACAGCTCAGAATTCACAAATGATACAGCGTCACCAGTGAGTAGCCCAGGAAGTACTGTCTTATCCAGCCCAAAAATATCATCTCCTCCATCAACACCTTGTACACCATTTTCACCATCAGTGAAGAGAGAAGGCCCATCAGGTCGCTGGGGTCACGCTATGTGTGCTATTGACGACAATCAGACAGTTTTGATTGGTGGACAAGGTGCTAAGCAGCAAATGGTCAAAGACTCACTGTGGGTTGTCTCTACCAACGCAGGGGAGGTAGATTGGACTCAACCTATTTCCACTGCCGGAACAGGTGCCGACAGGAGAATGGGCCACTCCCTGTGTTATGATGCTGAATCTATAGTACTCTATGTTTATGGTGGTTCCAAGAACAAGAGGTGGTACAGTGATGTCCACAAATTGAACACTAAAACATGGACGTGGACAGCTATTCAGACAGTAGGAAAAGCTCCAACAAGGGCCTACCACAGTTGTAATCTATTCCGTGGTGAGCTGTGGGTGTTTGGAGGAGTTTATCCAAACCCTGATCCCCAGCCTGACGGCTGCAGTAACGACATGTTTGTTATGAGCTTGGAAGCTAAGAATTGGTACACTCCTATTATCAGTTCTCTGAAACCCTTGCCAAGATCAGGGCACAGTGCATGCTTGGTTGATGACAGACTAGTAATGTTTGGTGGCTGGGATGCTCCTACTTGTTACAATGATCTTTTCTTCTTTGATTTAACAATAATGGAGTACACACAGCCCACCACCACAGGCACCCCACCCTCACCTAGAAGCTGGCACACAGCAGTAACTTTATCTGGAAAACGCATGCTCATTCATGGTGGATATAATGGCATTAAAACTTTAGCCGATGCATTTATTTTTGACCTAGGTTCTCTTACTTGGACTGGTGTCAAAACTCCAGAAAACCTGTATCCGAGAGCAGGACACTCCTCAATGTTAACACATGATGAAAAAGAGAAACAGGATAAGATTGCTGTGTTTGGTGGTGGAGATAACCTAGGAGAATACTTTAATGACTTTACAAGTTTTTATCCACAGGCTATTGACTCAAGTTAAAAGTAATAAAAATGTAGCAGAAATTGAAGGGAATTTCATTGCAGCTGCCTTTGAGGGTATAGTGATCACTGACCTGTAGGCAGGGTAACGTCAATAAAACCTTCACACTTGTGATTTACTAGTGTAGGGATTGTTCTTGACAACTAAAACAATATCTACACTTGTAAATTCACAGGGAAAAAAATATAAAATCCATGGATGTTTTTTGTCATATTCCCATTTGGAATCAATGGGAGTATTCTACCATCATTGAGTTTACCAAACTATTTCCATTGATTCCAAATGGGAATATGACAAAAACCATTCATGGATTTTATAATTATTTTCCTGTGAAAATACAAGTGTAAAAGTTTTGAGTTTATTGAATTTAGGCCAGACCTTAGCTCTGTGCTGTTTTAAAAGGGTGATGAGTATGGACTGTCAATCCTGTCATACTCCTCACATTAATTAATAAGCTATGTGTATTTATAAGCCATGATACTTAATTCAAGGTTTTAGTCTAGTAGTAAGTAGTTTATCATAACCAGTTGTAACATACTGAAAATAAACATTGTAAAAATGCAG

Protein

Uniprot

Uniprot term	Description
Q5RDA9	F-box only protein 42 OS=Pongo abelii OX=9601 GN=FBXO42 PE=2 SV=1
Q6P3S6	F-box only protein 42 OS=Homo sapiens OX=9606 GN=FBXO42 PE=1 SV=1
Q10AZ7	Protein GLUTELIN PRECURSOR ACCUMULATION 3 OS=Oryza sativa subsp. japonica OX=39947 GN=GPA3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR052124	Family	Rab9 effector with kelch motifs	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46647	RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan