Detailed information of gene19621.t1 in Actinoscyphia liui Gene info
Gene IDAnnotationChromosomeStartEndStrand
gene19621.t1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATEDchr53348433533498042+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|RBR

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF02668TauDTaurine catabolism dioxygenase TauD, TfdA familyDomainInterproscan
PF06155GBBH-like_NGamma-butyrobetaine hydroxylase-like, N-terminalDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR002867DomainIBR domainInterproscan
IPR003819DomainTauD/TfdA-like domainInterproscan
IPR010376DomainGamma-butyrobetaine hydroxylase-like, N-terminalInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR038492Homologous_superfamilyGBBH-like, N-terminal domain superfamilyInterproscan
IPR042098Homologous_superfamilyTaurine dioxygenase TauD-like superfamilyInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR050411FamilyAlpha-ketoglutarate-dependent hydroxylasesInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10696GAMMA-BUTYROBETAINE HYDROXYLASE-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0045329Biological Processcarnitine biosynthetic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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