Gene detail

Detailed information of gene19541.t1 in Actinoscyphia liui

Genomic Location: chr5:32706698...32715383
NR annotation: XP_020900175.1, E3 ubiquitin-protein ligase TRIM9 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene19541.t1

ATGGAGGGAGAGCTTACATGTCCTATTTGTCTTGAGCTATTTAAACGACCGGTCGTCCTTCCATGTTCACACAACCTCTGTACAAGTTGTGCAAGAAGACTGCTTGAGCCTCGCGGGTCCTCTAAAGCATGGGTGGACTGGGCTGTGAAAAACAGAGAGAGAAAATACAAATCCCATCTAGAACCCGATGTGAAGTGTCCGTCATGTCGGCAGAAAATCCCCGTCGATCCCAGAGGCGTAGACGCGCTACCGAGGAATCTGATTCTAGAAAATGTCATCGATCGATTCAAGGAAGAACGGCGGGATACAGCAACCCAGAGCGAGGAACCAATCCTGTGCCAGTTCTGTGAAGACTACACGTCTCAAACAGCAACGTGCATGTGCAAAGAATGTACCTTCACGTACTGTGGGACATGTTTCGACACGTACCACCCCATGAAGGGACCTTTATCGAGCCACACCATAGGCCCACCTGAAAAGAAGTCCCCGAAGTCCAAGGACAACAATGTGACTTGTCCAGAGCACAGCAAAGAAAAGGTGACTCTGTATTGTCATAAATGTGAAATAGCTGTGTGTTACATGTGCAAGGAGTTTGGGGAACACAAAGAACATAAGGTCGAGCTCTTGGACGCTGTGTTCAGGAAATCTAAGGATGACTTAAACAGGACTCTAGGCCACCTCATCAAGAATAACAACACAGCACACAAACTCATAGAGTCATTTGAAACCATGTGCGCCGTTGCCAAGAAATCGGGAAACGACGTCGAAGCACACGTTAAAAAAGAATGCGACGCCCTTTTAGCCATCGTAGAAAAGAAGAAAGCGGAATTACTGGATAACATCAACTCTTCTTACAACGAGAAACTGAGTGAGCTGCACGATACTATCCACCATTGTGACAAGACATTGCAGCAGTCTTTGGGTCTTGTGGAGTTCTCGCAAGAAGCTTTGAAAGAAGCTAATCCCGTCACCTTTCTCCAGACATCCAGCGCATTGAAAACAAGGATGGGTCTAATGTTGGATGCAGTCAAAGCATTACCTCCAGTATCGACCATTATCCCAACCTTTGATCACATGGCTGTTGATACGTCATGGGAAAGAAAGATGCTCAAGAAACTTACTTGGCTGCACGAACCAGGCAGCCCGTCATTTGTACCCGCTCAATGTAAAGTCAAGAACAGATCGATTTGTTTGGTATGGAGTCAGCCACACAGCGCCGTGGACGCCTATCACTTGGAAGCTGAGGTCATCAATCCCCCTCTTTATCCGGGTGGTGAAGAGGATACCGATGTTATACGGGTCAGTACGGGAACAAACACCCGGTATGTCGTAGAGTGCAGCAGGTACAACGCCAAGGTCATCGCGCGGGTCAAAGCCTCAAATCGCGCTGGTGACGGCCCTTTCGGGAAAGAGATTACTCTGACAGCTAGTAAAGGTGTTCATTTCAAGCTTGATCCATCGTCGTCCCCTCACCGTGAGCTGGCGTTCTCACGCGACTTTGCCATGGCCAAACTAACGGGTCAAGTCAGCTCTACTGTACTAGGTGACGTTACCCTTAACACAGGCCGTCATTACTGGAAAGTTTGTGTTGACCAGTTTGCAGGGGCTAATTATGCAGGGTACATAGCGGTGGGCGTGGCAAGTAGAGCGGTGCAAGGAAAAGTCTTGGGTGACTATGATGGTTCGTATGCTCTCCAAATCATTGAGAACTCCACAAAGTGGTGTGAACACACTAATCGACGTCTACAAACCATACAGAAGACCAAGGAGTTTAAAGGAAGCAACATCGCCATCTTACTTGACAATGACGAAGCCACATTGTGCGTTTACCTCAATGGCAAACTACAAACCGACCAATCACGGCCCAAGGGACCTTCTTTTGTTGGTGTTACGGGATCCTTGCGTCCAGCACTGTGCCTTTTTGGGACCTCTATACAGACGAGTGTCCTGACTGGTTTGGAAAATCCAACGATATGTCCAGGAATGCCTGTGATCAACCTTGAGGACTGTACAGTGGACAATACCAAAATTAGCCTCGCCTGGACTCCCCCGGAAAATTGCAACGTTGACTGCTACATCCTGGAGGCAGAAATTCTGAATCGGGAGGGGGACATCCACCAGGAGAGGAGCTTTACCAAAGTTTACCAAGGACCTCGGTACAAGTACACAATTCGTGGCTTGGAGTACAACGTAACGGTCCTTGCGCGTGTCATTGCAGTTAATACCGCTGGCGAAAGTGAGCCAAGTGAAGAGGTGTCACTCTCAACTCAAAGAGGTGCAATATTCAAGCTTGACCCAGAAACGGTCCACGAGACACTGAGCTTGACACGTGCAGGTAAAACCGTCCAGCAGAACGTCGCTACGCACGCCAACGTGTTTGGAGACGCGTTACTTGCTGATGGCTGTCACTACTGGAGAATTGAACTTCAAAGTTTTAGCTCTGAAAACGGATTCGTAGCTATTGGTGTGGCAAGAAAACCCGTTCAGGGAATTATCCTTGGTAACGATACAAACTCATTCGCATTGCAAGTTTTCGCGGGAACTTCGGTGAGGACAGAAAACTCCAAAAACAAGATTCAGATAAAGAGGAAAGCGGATGACCTTAAAGGAAGTAGTTTTGGCGTACTTCTAGATCTTAACAAAGAGATTTTAAATGTTTACCTTGACGGGGAACTCCAAGTACGAAGTACCTCTCCCAAGGGACCAAGCTTTGCTGGGCTGTCTGGGATGTTCTGTGCGAGCCTGTGCCTTTATGGATCCAACGTGAAGTTGAGCCTTGTGACGGGCATTGAGACACCCCCACCACCAGCTGCTCCCACATTCAATAAAGCCGTCTGCACGGTAAACAACACAACATTACAGTTTGGTTGGCACTCACCGCAGTCCAAATGTCCTACCGACTACTACGTCCTTGAAGTGGACGTTGTCAAGGCAACCGACTTTTCCAAAAGAAAGAAGAAAGATCGCAAATTCAAGCGCGTCTATGAAGGTCCACTACGAGAACATATGATGTACAGTGTGTCATACGATATGAAGATTATTGCACGCCTTTGTGGGGTCAATATGGCGGGAGAAGGTAGCGTCGGTGAAGAGCTAGTACTATCGACACCAAAGGGTCTGTATTTCCAGTTAGACCCATCCACAGCCAATCACGATCTCGACATTTCTAACAATAACTGCACGATATCGCTCAAAAGTCCCATGTATACATTTATACTTGGTAACGTCAAGCTCACCACTGGCTGCCACTACTGGAGAGTGCACGTCGATGTGTTTAACAGTCCAAACCAGCTTTCAATCATAGGGGTTGGTATTACCCGTGGCATCATAGAAGACCCAATTCTAGGAGAGGATTCACATTCATATGCCGTTCAGCTCAATGAACATCAAACCACAACATGTATTAATACGAAGAACAGAATCCAAGTCAAGAGGTCATCACAGGAAATGACTAACAGTAATGTGGGAGTTTTGCTCAACTTGGACGAACGCTTACTCAATGTCTACTTCAATGGTAAACTTTTGACAGACAGTTCACGGCCATCTGGACCAACGTTTGCAGGCATTAATGGGGATTTCTACCCAGCACTGAGTTTGTATGGAACAAATGTTAAGCTTACTGTGCATACTGGTGAATCATTTGAAGCCCAGGCATAA

Transcript

gene19541.t1

Protein

Uniprot

Uniprot term	Description
O15344	E3 ubiquitin-protein ligase Midline-1 OS=Homo sapiens OX=9606 GN=MID1 PE=1 SV=1
P82458	E3 ubiquitin-protein ligase Midline-1 OS=Rattus norvegicus OX=10116 GN=Mid1 PE=2 SV=1
O70583	E3 ubiquitin-protein ligase Midline-1 OS=Mus musculus OX=10090 GN=Mid1 PE=1 SV=2

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00622	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR001870	Domain	B30.2/SPRY domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017903	Domain	COS domain	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR050617	Family	E3 ubiquitin-protein ligases and FN3/SPRY domain-containing proteins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24099	E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan