Detailed information of gene19402.t1 in Actinoscyphia liui

Genomic Location: chr5:31329302...31331458
NR annotation: XP_020909295.1, small nuclear ribonucleoprotein Sm D2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q3SZF8Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1
P62316Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1
P62317Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR047575DomainSm domainInterproscan
IPR027248FamilySmall nuclear ribonucleoprotein Sm D2Interproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0008380Biological ProcessRNA splicingInterproscan
GO:0030532Cellular Componentsmall nuclear ribonucleoprotein complexInterproscan
GO:0034715Cellular ComponentpICln-Sm protein complexInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11096SNRPD2, SMD2; small nuclear ribonucleoprotein D2-DNA replication proteinsko03032deepkoala

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