Gene detail

Detailed information of gene19268.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene19268.t1	CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB	chr5	30081416	30096885	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene19268.t1

TCGAGGGATATTTGCCTCTGACTGGAGTCCTTCCGTTTAGAGGAGATGGATGGAATTGACTTGAGAAGCGAGCGAGGAAAAAAGAAGAGAATATCAGAGCATTCATAGCGCTCTGTAGTACTGGATTTCCTCTCCGTTCTGGTCTTTGAGAGAAGTTCTCCCCGCTCCTCCTCGATCCCACTGGCTTTGCGTCAAGAAAGGTGCACACGTGACCCAAGAGAACACATTCATTGTAAGTTTTTTCTCTGAAACATTGACAGAAAGGCAGCGACGTGGCGAATACAATACCACCTGTACCCGTGGAATACGTAATCTCCTAACATACTATATTCTCGCCTTCACCGTAGCCCTTAACTGGATATGGCCGATTTTGGCCAAAATACAAGACCATTGTCACCAGTTGACTTCAAGCACAACGAGTCGCGCACCACCTCACTCTTTTTCCCGGCGAGTATCATTGACGAACAAAACGGGAACAGGCCAGAAACAAAAAACGGAGTTTGTGAGGACTGTATTGAAGATTCTACTAAATCTAAAGTAAATTCTACGCAGCCACAGACAGCGAGTTTAGGGCAAAAAAAGCTGGGGTTTGCTGGTGAAAATTCAATGTTTCACGACTTCCCTACTTCGACCACATTTTGGTCTCCGGCGAGCATCGATGATGCATTTGTTCAAACAGGAATTCCCCCGGTCAATGGAGTACACTTCTCTTCCAATACACAAATGCTAGGCTCTCCTAGAAGACCAGTCGCAGCGCCAACAATTACAACTACCATTAGCCAACAGGCTAGAAGACCGCTACAGAACAACTCTTCACAATATATGGGACAAGCTAAACCCGTGCCAAACATCAACTCACTAGCGTCGGGCTGGAATGGCAATCAGACGCACTCCGTATCTGGATGGCCGCAACAGCAGCACTCAACAACATGGGGAAGAGCCTACACGACGCCAAATAACGCGATTATGAATCGAAATTCGCGGCCTTCCTCCCTTACTTTTCCGCCATCATCAAGGTTTCGGAGCAATGGCGGATCGAGGCCTTCTTACACAGCAAACTCAGTTTCACGGCACGGAATCTCCGCCCAAACAATAACCCAAGGACTACAAAGTTTGAATTTGAACGGACAACATCCTATCGATGGCACAATCCTGGATAACATTACTGGTCTGGGGAATTCTCACGGAACAACCAACGAACTGTCCAACTCGTTTTATTCGTACCAGGATTCCATGAAATTTCCCTCGCTTGAAACTCGACTTCTCGATATCATTCGGTCGCCGTCGGATCCTCCAGAGAGCGTCACGGCTTTCCGCTGTCAGCTTCGAAAGAAAGGCGGCTCGCAACATGGAGATCAAATCGTACCGTCCCTCAACTCCTCATTAAACTGCTCACCCAACTCAGACCAAGACTACACTCCACGCTTCTCAAGAAAGGTTTTTGTTGGTGGCCTTCCACCAGACATTGATGAAGATGAAATTCATGCCAGTTTTTGCCGATTTGGAAGTCTGACAGTTGACTGGCCTCACAAAGCAGAAAGCAAGTCATACTTCCCACCCAAAGGATATGCCTTTCTCTTGTATCTTGAGGAATTATCAGTTCAAAAGCTGATTGGAGCATGCTATCGTCAGGACGACAAGCTGTACTTGTGTGTATCCAGCCCAACGATCAAAGACAAGCCGGTTCAAATACGGCCATGGAACCTATCAGATGCAGACTTTGTAATGGATGGCTCACAAGCCTTGGATCCAAGGAAAACCATCTTTGTAGGTGGTGTACCTCGTCCCCTACGTGCTATCGAGTTGGCTATGATCATGGATCGATTGTATGGTGGAGTGTGTTATGCGGGTATTGATGTAGACCCAGAACTCAAGTACCCCAAAGGTGCTGGTCGGGTGGCTTTCTCCAACCAACAGAGCTATATTGCTGCCATAAGTGCACGCTTTGTGCAGCTCCAACACGGAGACATTGACAAGAGGGTTGAAGTCAAACCATACGTTTTAGACGATCAACTGTGTGACGAATGTCACGGCGCGCGTTGTGGAGGCAAATTCGCGCCATTTTTCTGTGCCAATGTCACGTGTCTACAGTACTACTGTGAGCAGTGTTGGGCGATTATTCATTCAAGAGCAGGGCGGGAATTCCACAAACCGCTGGTGAAGGAAGGAGCCGACAGGCCAAGGACAGTTTCATTCCGATGGTAAATCACATCAACCAATCCCAGGAGGTATCTTACTAACCACAGCCAATCAGAATCATTTCATTATTTAGCCAATCAGAGGGCATTTATTGAGCAGCTCCAACCACGTATGACCCTAACCCACTCCCCCTTGAGCTTGATTTTAGAAAAAAACTCGGTGGGTAGTGGTCACCACAGGTAACCCAAACCAGTATTTAAAACAAAATTTCAGTTTTTTTTTAATAAGTTGCCTCTTTGGACGTCAGTGAAGATACAAGATTATGTTGCTTAATTATATGTTTTTGGCTTTGTAATCAAATAGAAGGGTTTGTCAGAGCACATCATAACCGCGCATGCCAACCCCAGTTTAGTGAATACTGATTACAATGAATCTGTAGATACATACATTTACTTCTTATTTCATCTTGAGTAGGGTTTAGAGGAAGGATAGAACACATTCTAACTTGCAGTTTTTCTAGGGACAAAGTGTTTCAAAAGCCGTTTTTTAATGTTTGAAACATGGTGCTTGGACGGAAAGGGATGGTGGGAAATATTTGTTGCTTCACTTGAACAAAAAGACTTGGTTAGAATCGATACAATAGTATAGCGATAATCGCCATGAAGCAATAATACCAGTCAAAACGTTCTCACAAACATGAGATGTGTCTGTTTTTCAATGAAAAAATACGTGAAACGGTACGAAGTCTCGTGCTCTTAGGAACGTTTTTTCTGCATGTTGTGCCAATTTTTTCACTTTCCCTTTCTGTTTCATTACCCTATTTCTTTCTTCTCATAAACGGTGTTGAATTTAGATGGATGATATATATTTCTTACGGTAATAATAATAATAATAATATAATAATCGTATTATGTGGTAAGGAGTATCAACCTCCCAGATGAACAATCATCGGAATCAACTTTTCAAGATGAACATTTTCATTACTTAACAAGTCGTTCAGAGGAAACATTTTCCCTCTAATCAAAGCATCGATCAATCGGGGTCCTACTAAAGCAAAATCCTATAATTTTTGATTTGATAAAAAGAGAATCGTTTGAATTTGAATTTTTAGTCCAGACGAGATATCCTTTTCTAGCATAGTTCTACATTTTTAGCTCTTTCATGGAAATCTGTTGTAAATAGCGACTATTATATTCATAGAGATGTTCAGGTGCTTGCGATGAATTTTATACAGCAGTGCAACGCTTTGCAACAACACCCGCTAAATGTGCTGTATCTGATTCGGAAATTCAAGCAAAACGCACCGAATTTGTTTGTTTAGTTCAAAGAACTGACTCTCATTGTTTTTCTCAGCAGTAGTGGTAGCTAATTTTTGAGTGAAGGATAAATTATATTTTTTTCTGATCATGAAATATCATTTTTTCAAGTTATATCTTTTTGAAGCTGTTCTGTAACCACCGAAAGAGCAGATTTCGTATGAGTGGGAACCCTACCGTACAGTGACACTTAAATGGCTTCCGCTCGTGATTGGTCGGTTTGTGTTTTTGTGCATATTGATTGGTTCAGAGCGGTAGCCATTTAAGTGTCACGGTACGGTAGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16366	CEBP_ZZ	Cytoplasmic polyadenylation element-binding protein ZZ domain	Domain	Interproscan
PF16367	RRM_7	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032296	Domain	Cytoplasmic polyadenylation element-binding protein, ZZ domain	Interproscan
IPR034819	Family	Cytoplasmic polyadenylation element-binding protein	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038446	Homologous_superfamily	CEBP, ZZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12566	CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0045182	Molecular Function	translation regulator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-