Detailed information of gene19080.t1 in Actinoscyphia liui

Genomic Location: chr5:27643391...27673338
NR annotation: XP_031567290.1, U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O75643U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Q6P4T2U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
F1LNJ2U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02889Sec63Sec63 Brl domainFamilyInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF21188BRR2_plugPre-mRNA-splicing helicase BRR2 plug domainDomainInterproscan
PF18149Helicase_PWIN-terminal helicase PWI domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR004179DomainSec63 domainInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR050474FamilyHelicase Hel308/SKI2Interproscan
IPR048863DomainPre-mRNA-splicing helicase BRR2-like, plug domainInterproscan
IPR041094DomainBrr2, N-terminal helicase PWI domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47961DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12854SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2EC:5.6.2.6
Spliceosomeko03041deepkoala

TOP