Gene detail

Detailed information of gene19062.t1 in Actinoscyphia liui

Genomic Location: chr5:27429807...27433936
NR annotation: XP_031575336.1, uncharacterized protein LOC116308961 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene19062.t1

ATGCTGCTTCTGTTGCCAGCTGTCTTCAGTCTTGAATGTAAAAGTGAACATAACCAGCCAAGTGATGGATGGGTTTTGTTTCGTGGTACGGGACTTTCCTATCATTACTACGATCTGTCCAAGACCACTGCTGTTGAGTTTCCTTCTCTTCAAACTTCTAACAATCCACTGGCAAAAACTGTAAAAGCCATGCTCACAGAAAATACAGATTATGTCGCCTACACCAGCGATCTATCTAGAACAGGTAGTGGAGATATTGAAGCAAACCTTGATAAAAATTTTCCATCTCTTCAAAATACAGACTATGTCGCCTACACCAGCGATCCTTCTAAGAAGCCCCGCAGAGATATTCAAACAAATCCTGATAAAAATGGGATTGTCAGCCTGAACAGCCAAGGCCAAGGAGTTTGGCTGATGCATTCCAACGTCTTCTTTCCCCCATTATCTGGAGAATATATTGCAGACCCTGCGACTAGCGAATGGAAATGGTTAGATGTCACTCCATCTCAATATGCTTACTTTCTCTGTGTCACAATCAAAGAAAGAACGCAATTAACAGCTATCATGGATCTGCTAGCTTCTAGTACAGCATATGTCCATATTCGTCGAATTTCTTCACCCAGCATTTTTAATCAGTTCATCACAATTGACGCAGCGACACCTGCAAAGAAGTTCGACAAAGCAGGGCAGATGGCAACAAATTGTAAAACGTCCATGCCTTCTGTGTTCGGTAGGAATTGCTATTTGTCACACGAAATTTCTAACAAGATCTCCTACTTCTCGCGCCATCGTTTCACAACGCCTGGTTATCATCAGTTTTGTTTCGAGCCAACTAATGAAAGGAAAGCAGTTCTCAGCCCGATGCCTTTGTGGCCCAATTTCCCGGGATCAGAGATACCACAGTCTCAGATGGTCGCAGTAACAGTACCGGGTGCTACAGCCAGGGCATGTTTTGGTGACTTATTTCTGATGAAAGATAAGCCTGGAAAAAGTTCGTTGGTGGTTTGCTTCGAACATGAGAACCTATGGCAGAAGCTGCAACTGGAAGGATTCGAGTCCCTCGAGCACTGTTTGCCGCATAATACTAATGGGAATCTCACAGTGTTGTCAACAACCTTGCCGGATCTTCCTCAGTTTACATTTCCACATATGATTGCAGATTTCCATCACAGAGCTGTAGGCAGCGTTCTGAAACGGGACAAGCTGGGAAATCTTCAAGACGACCCAACGACATCTCTTGGTGATGTTGATGATCTTACCTTCCATGCGACATTGACAGTACAACAAAGAATTCCGCGAGTTTCATCTTCAGTAAGACAACGGGAAAGACGTTCAACAAAGAAAATCCGTCCACCAAAGAAACCCCGTAAACAGATTGTGACCAAAGTGGACAATCTACGGACCTTTGACAAGAAAGTAAGATCAAACGACCACCCTGTCTTGGCTCTCTTCTGTTTTGACTGGTGCAGTCACTGTACAACATTTAGATCGAAGTTCAGGAAAATGGCCAAGCATCCAAGTTTAAAGAATGTCACTTTAGTAGATGTCAACTTGAAGATGAATCACTTACCATCCGCTTTTGATGTGCTGATGTCTCCTACACTCCGCTACAAACCTGCAAGCTATGGGTACAACAGTCGAAGGAGGTTTGGTGACTACGAGTTGGCTGGTTATCGAACTGTGGAAGGGAAGCTGAGCATCCAAAACGTTCTCCACCAAGTTCAGAATGCAAGGTTCTTCACGGCTGCAGACAAGAAAGACGAAGATTTTCAAGGACATCTTGAAACCGATAATAGCAATGCAAAAGTGTCCACTCCTCCTTTTATAAAGCTGGTATCAAATCGCTCTGTTCTTCATCAACTTGTAATGCGGCCACAAATAAGCCCAAAGACTAAGGCAAATAAGATTAACAATTGCAGCAACATTCTGTCCACAGAGATTTTTACCAATTTAATCAAAGATGCAGTTGGTCTTTCCAAATCACCAACTGTAATGGTTGACCAACTGCAAAGTATCCTTGAAAATCTCCAAAATCTGAAAAACCACAACAGCGTAAAACAGTGGAAAGAAAATCCTCTATCCAAAAAGGGTTTGAAGAACAAAGTTTACTCTCGACCGAGCAGGAGCCAAAGAGGTGCCTTCAAAATTATCAGCAATTACCTTATCAAGGCACTCCAAGAAACTGCGGTTGAGATGCAACGAATGAAAGAAATCAGTAAAGCCCAGTTCTTTTCCAGTTTGAAAAACAATCTGGACAAGAATTTGAAGCTACTGCTGGGCAAGACAACCAAAATAAAGATCAGGAGGAAGTTGCTTGCTAAACATGTTAACAAAATGATCCAGTTCGTTGGTCTCCTAAAGGAGAGTGAAATAGAAATTACAGATTATTGCACTAAATGA

Transcript

gene19062.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085	Thioredoxin	Thioredoxin	Domain	Interproscan
PF03265	DNase_II	Deoxyribonuclease II	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR004947	Family	Deoxyribonuclease II	Interproscan
IPR013766	Domain	Thioredoxin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10858	DEOXYRIBONUCLEASE II	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004531	Molecular Function	deoxyribonuclease II activity	Interproscan
GO:0006259	Biological Process	DNA metabolic process	Interproscan
GO:0006309	Biological Process	apoptotic DNA fragmentation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13143	INTS6, DDX26; integrator complex subunit 6	-	Spliceosome	ko03041	deepkoala