Gene detail

Detailed information of gene18659.t1 in Actinoscyphia liui

Genomic Location: chr5:22022090...22058193
NR annotation: XP_031568820.1, LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH16, mitochondrial-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene18659.t1

ATGATATGTCTGAGGATAAACACTTTCACTCAACTTATTCAAAGATTCCAATTTCAAGTCAGAAAGTTATGGTATGTCGAGTCTGGTACGCGCTTTGGTCTGAAGAAAAATCGTCATTTGATTTTCACTTGTGTAGCTTTAAACAAGAAGACGTTTATCCCGGAATGGACAAGAACTTGTGCGGTTTCCAAACGCAATCCAATTTTTGGGTCTTGGAGACCTAAACGCGAATGTCCGTGTTTCCTATCCTGGAAACATACCGTTATTTCTACAAATCATTTCAAAACAGCATCAACTCAGCCGTCCAGTGCCTCATACCTATCCAATGGACTTTCTTGTAGAGCTTTTAGTAGCTCTTCTTATAGTAAACATAGACCTACAAGGGGAGGATCTCGTAGAGCGTTTAAAAGGACGGAAGGAGATCCTCACAATAGTTTGTCAAGATTTGACAACTCAAAAAGCACAAGTGTCACTTCTAGACGTGTTAGAGACGATGATAACGTAACTAAGAATTATCCATTTGTTGGTGATGCAAGAGTTTTATCATATAGACTTCAAAAAGGTGAGATAAATAATATACTGTGGAGATTACAAACAGATCACAGAATCATTGAAGCAGCTAACAACGAGGGCTTGAATGAGGGACAATTTAGGACAATATTAAACTCATTCAGAAAAACAATGAGGAAAGAATTTAGAAGCAGTACATCATTGCAAGGTGTTGTGTGTGCCGTGAATACCAATCAAGCACATTTACACGATTTGTTTCCATTCATCTTAAAACATGCTAATGAGTTATATCCAATGAGAAACTGTAATGTGGAAAATGTCAAGAGAATATCAGACTTAAGGGGGCCACCAGACCTATTTCCCGAAGCTCGTAAATTGAAGAGAAAAATCATCTACCATGCTGGCCCTACTAACAGTGGCAAAACACATGCAGCATTAGAGAGATTCAAGGCATCTGAGTCAGGATTATACTGTGCTCCTCTTAGATTGTTAGCAGCAGAGGCCTACAGAAGAACCAATGAAGCCGGTGTACACTGTGATTTGTTAACTGGGGAAGAAAGATTATGGGCCATTTCTCCTGATGAGCCGTCGTCACACGTAGCTTGTACAGTTGAGATGAGCAGTACAAAACATCAGTATGAATGTGCAGTTATTGATGAGATTCAGATGATGAGTGATCCTAAACGGGGCTGGGCGTGGACCAGAGCCCTGCTTGGACTTATCTGTGAGGAGATTCACTTGTGTGGAGAAGACACAGCAATTGAGATGATTGAGACCATTGCTGACTCATGTGGTGATGAACTAGAGGTGTTGAAATATGACAGGCTAGGACCTTTGACTGTATCACCAAGTCATTTAGGTGGCAATCTTTCACATATCAAACCAGGTGATTGTGTAGTAGCTTTCTCCCAGAAGGAACTGTTCACAGTTCGCCAGAAGATTGAAAAGACCACTCCCTACAAGTGTGCTATAGTCTATGGGGGACTGCCTCCAGCAACTCGAATAGAGCAGGCAGCAAAGTTTAATGATCCTAATGATGAACATGAGATCCTTGTTGCATCTGATGCCATTGGTATGGGTTTAAACCTGAACATTAAGCGTATAGTCTTCAAAACACTAAAGAAATATGATGGCTATTCTGTTGTCCAGTTAACCCCTTCACACACCAAACAAATAGCTGGCAGAGCAGGTCGGTTTGGCTCTAATCATCCCGAGGGGGAGGTGACAACATTGTTTGGGAGAGATTTTAATAGTCTTAAGTATCTTTTAAGAAGGCCATCAGAGCGAATTCAGGCTGGTGGCTTAGCACCGACTATTGAACAGATAGAAATGCTGTCCCATCAAGTACCTGATGCAAACCTCTCGCGTCTTTTGGACGTGTTTTTCAAAGTGGTGCAGTTAGATGGTGACAACTACTTCATGTGTGATCTTGAGGGCGTTAAGTACATTGCTGATCTCATCGATGGGATCCCTTTGTCGATCTGGGAACAGTACACCATGTCGCAAGTACCGATTAGTCAGAACAAAACACTATCTGCGTCTGCTATGGTAGAGTTTGCCCGATATGTTAGTAGACGAGAAAAAATTACCACTCCAGCCTTGAAGGAGATGATCTCATGGCCGCCTTCGATGCCTAAAACACTCAAAGGTCTTCAAGAAACGGAAACACTCCATGAAATATGCGATGTCTACCTTTGGTTAAGCTACCGTTTCCCTGAGATATTCATCCATGAAGAGGAAGTACGCACGATGCAGCGGTTCATAGAAAATGTCATTGGTCTAGCAGTATCATCAAATCTCAAACAGCGTCGTATTCCTAAAGATTTCAGAGACTTTACAAATGGATCGGAGCCAGGGAACTCTAAGCAAGATTAA

Transcript

gene18659.t1

Protein

Uniprot

Uniprot term	Description
Q5ZJT0	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus OX=9031 GN=SUPV3L1 PE=2 SV=1
Q5EBA1	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Supv3l1 PE=2 SV=1
Q80YD1	ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Mus musculus OX=10090 GN=Supv3l1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF18147	Suv3_C_1	Suv3 C-terminal domain 1	Domain	Interproscan
PF18114	Suv3_N	Suv3 helical N-terminal domain	Domain	Interproscan
PF12513	SUV3_C	Mitochondrial degradasome RNA helicase subunit C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR041082	Domain	Suv3, C-terminal domain 1	Interproscan
IPR041453	Domain	Suv3, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR022192	Domain	Mitochondrial degradasome RNA helicase subunit, C-terminal domain	Interproscan
IPR044774	Domain	Suv3, DEXQ-box helicase domain	Interproscan
IPR050699	Family	RNA/DNA Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016817	Molecular Function	hydrolase activity, acting on acid anhydrides	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000965	Biological Process	mitochondrial RNA 3'-end processing	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0045025	Cellular Component	mitochondrial degradosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17675	SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3	EC:5.6.2.6	Mitochondrial biogenesis	ko03029	deepkoala