Detailed information of gene17376.t1 in Actinoscyphia liui

Genomic Location: chr4:62575516...62604577
NR annotation: XP_055059638.1, uncharacterized protein K02A2.6-like [Misgurnus anguillicaudatus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7PMT1Homeobox protein extradenticle OS=Anopheles gambiae OX=7165 GN=exd PE=3 SV=2
B4F6V6Pre-B-cell leukemia transcription factor 1 OS=Xenopus tropicalis OX=8364 GN=pbx1 PE=2 SV=1
B3DM47Pre-B-cell leukemia transcription factor 2 OS=Xenopus tropicalis OX=8364 GN=pbx2 PE=2 SV=1
 Gene family
Gene familySubfamily
Transcription Factors FamilyHomeobox

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF05920Homeobox_KNHomeobox KN domainFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03792PBCPBC domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR008422DomainHomeobox KN domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001356DomainHomeobox domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR005542DomainPBX, PBC domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

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