Gene detail

Detailed information of gene17001.t1 in Actinoscyphia liui

Genomic Location: chr4:54537820...54551241
NR annotation: XP_020907399.1, nuclear cap-binding protein subunit 2 [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
B7P877	Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1
Q9CQ49	Nuclear cap-binding protein subunit 2 OS=Mus musculus OX=10090 GN=Ncbp2 PE=1 SV=1
B1WC40	Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus OX=10116 GN=Ncbp2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027157	Family	Nuclear cap-binding protein subunit 2	Interproscan
IPR034148	Domain	NCBP2, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000339	Molecular Function	RNA cap binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005846	Cellular Component	nuclear cap binding complex	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12883	NCBP2, CBP20; nuclear cap-binding protein subunit 2	-	Spliceosome	ko03041	deepkoala