Gene detail

Detailed information of gene15864.t1 in Actinoscyphia liui

Genomic Location: chr4:36307102...36309958
NR annotation: XP_020899271.1, RNA-binding protein 42 [Exaiptasia diaphana]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
A2VDB3	RNA-binding protein 42 OS=Xenopus laevis OX=8355 GN=rbm42 PE=2 SV=1
Q66KL9	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1
Q6DRG1	RNA-binding protein 42 OS=Danio rerio OX=7955 GN=rbm42 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034215	Domain	RBM42, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050825	Family	RNA Recognition Motif and Poly(A) Binding Protein Families	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25079	RBM42; RNA-binding protein 42	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala