Detailed information of gene15856.t1 in Actinoscyphia liui

Genomic Location: chr4:36205714...36207000
NR annotation: XP_020899246.1, splicing factor 45 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8JZX4Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1
Q96I25Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1
P42698DNA-damage-repair/toleration protein 111 OS=Arabidopsis thaliana OX=3702 GN=DRT111 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF01585G-patchG-patch domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003954DomainRNA recognition motif domain, eukaryoteInterproscan
IPR034653DomainSPF45, RNA recognition motifInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR000467DomainG-patch domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR040052FamilySplicing factor 45Interproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13288SPLICING FACTOR 45 SPF45Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000380Biological Processalternative mRNA splicing, via spliceosomeInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0045292Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12840RBM17, SPF45; splicing factor 45-Spliceosomeko03041deepkoala

TOP