Gene detail

Detailed information of gene15263.t2 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene15263.t2	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	chr4	28871256	28885522	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene15263.t2

ATGATATCTTATTCAAGAAGCTTTCTATTATCTCGTCAATGTTGGTGGAAGACATCGTGTGGACTTCAAACTTCCCGCCATATTGTCAAGAAACAAGCTGGACCCTTATCCTGTCAAGTTTGGAGTGCTTTAAAGACGGCTGGCATTTTACGAAAGTTGAGAGGAAATCGTGGAGGGTTATGCCACTCTAAACTCTCCACCATTAAGCCAATTTCTGCCTCAAATCGTCAAAACTTTTCATCGAAGCTCCAAATTACTGATGCTGAACGAAGGACTCGTACAAGCGCCATTAGTCATGAACCACTGCGTAGGAACAATTTAGTACAAATCAAATGTAGTACAAACTCTAGTCCATCACAACCAAAAATAACTCCTAGATGTATGGTACTAAATGCAAGATCTTTGGTAAAACCTGATGCTGCAGCTGCACTACATTCTGACCTGGTTGCTAATAAGATCGACATTTGCTTTATATCGGAGACTTGGCTTCATACAAAAGTATTATCTCATCTTGTTTGTCCACCTGGTTATTGCATTGTAAGGAAAGATCGTCCTGCACCTAAAGTTGGGGGTGGAGTGGCTATCCTTTGCAGAAATGACTGGAAAGTTAAAATTGCTGACTCAGGTCGCCACTTTGAGTGTCTTTGGTGTATCGTAGAAACATCGAACTCTGTATTTTATACAGCTGTGGTCTATCATCCACCGGACCCATCTTATGACACAAGTGAGTTCCTAGATTACTTATCTGACTGTTGCGATTCATTTCTAGCAAATGATCACAACGCTAAATTGATAATTGCAGGCGATATAAATCGTCTTGATATTAGAGACTTTGTCACCCAACATGCTTTCAAACAATTAGTGACAACTCCAACAAGAGGCCAAAGGATTCTCGATGTGTTTCTAACTAACCACCCATTATTATGGAATACACCTAAAGTGTTTGCAAGCCTTGTGCGCTCAGACCATCATTCTGTACTGATCCCTCCTAGAACGTCAACCAAGGCTATAAGGAAAACAGAGTATTTCAGGGATGTACGAGAGCACTATAAGATTGAAATGGATAACAAACTAGAAACAATCGATTGGAGTCACATCCTATCATCTGATGATCCATGTGAGTCCGTGCATTTATTAAGTACCAAGCTCTGGACAACGTATGATGAGTGCTTTCCATTGAAAAAGGTCCGAACGTCATCTAGGGACCCTCCTTACATGTCTCCCTTGATAAAACATCTGTTAAAAGAGAGACATAAGCTAAAGAACATCTTCAATCAAGAAGAAAAAATTGCACTCCAGGAGAAGATCAACAAATTGATCCGCGAAAATCAAATCAATTCTGTGAAAAAAGAAAACATCAAACACAAAAATGGTTCAAAGCGCTGGTGGGAAACTGTAAACAAGATGACTGGGAGAAAGTGTCGCAGTACTCCCGTTAGTAATATCATCAGCCCTGATCAAATTAACTTGTACTTCCAGTCAATCAATACTGATGCTGAATATCGTAAACCGGAGCTGATGGAAATACCTGAAGGATGCAGAATTCCAACTGTTGATGTAAGAACTGTCAGTCAGTTACTATGCAAACAAAAGAAATCTGCTTGTGGTCCTGATGAATTGCCTTACTGGTTGTGGCGTGATTACTCTTATCATTTGGCACCCGTTATCTGCAGTATATTTAATTGTTCATTGCGCAAGCAAAAGGTTCCTGCACTTTGGAAGCTTGCCAACATTACACCGATACCCAAGGAATCTCCTTTCAGTGAATGCAACCAATTAAGGCCCATATCTCTGACAAACATCATAATGAGGATATTCGAGAAAGTTGTGTACAATCAAGAGTTATCTTCCTGTCTCAAGCAAGTCATTGGCCCCGACCAGTTTGCCTACAAGAAAGGTTGCAATAGTACAATGGCCCTCATCAAGTGTCAACATCACTGGTTAAACTGGCTGGACACAAAATATAACTGTGTTAGAGTATTTTCTTTTGATTTCAGCAAAGCATTTGATACCGTGTCACACAGAATTGTCTGTGACAAAGCTAAAAATCTCAATATCAACCCTTTTATAATCAATTGGATCATAGATTTTCTGACTAATAGAAAGCAGAGGGTCTTTGTAGATGGCACTATAACTGATTTTGTAGATATTAATCGCGGGGTTCCCCAAGGGACAGTTTTGGGTCCTGTACTCTTTTCAATAATGGTGAACGACATATGTCCTTTACATCCTAGCAAGTGTCAACTAGTAAAGTTTGCTGATGACATTACGTTTAGCATTCCAATAAGGGAGGGCCTTCCAGATCCTTCCCCTTTAGAGGTGGATAACTTAACCAAGTGGTCTGTAGATAATAGAATGTCACTTAATCTTAAGAAAACATGGGAGATGGTTGTTAGGGGAAAGTCTAAGAAACCTATTCCTAATGAATTACCTAACATAGAGCGTAAGCAGGAGTTGAAACTCCTGGGTGTAATCTTTAATGAAGATCCTTGTAATTGGGATACCCAATTTGATGTACTTCTAAGCAAAGCGAGTTCTAGATTATATATATTGAGGGTGTGCAAGTTTTATAGGTACTCTCTAAGTGAGCTTACTTCACTGTACAACAGTTTGATCATGTCATTGTTTAGCTATGCTATTGAGGATTTTGATAGAACGGACATTGCATTGGCGACCCTCATTTCAGCCGAAAAACACAGAAATTATAGAAAGTTTTCGGTGAAATGGTTTGCTTATTTTGTATTTCGACCTGTACGTTCTAGGCGTTTTGGTCCGAGATGTATAGGATGTAGCGAGAGGATTGTCGCCAGCGATGAACTTGTCCGAAAAATCGCTTCTAAAGTCTACCATTTAAGTTGTTTATGCTGCGTGACTTGCCAGAAACAGCTCGACACAGGAGATGAATTCTACTTACTGGAAGGTGACCGAGTTATCTGCAGGAAAGACTACGATGAGAAAATAGCTGCTAAACCGCCTGTAGTGCCTGATGCGGCCACTTCCAGCACTGCAGAAAAGACTAAACGCCCGCGCACATTTATCAATACAAGTCAGCTGTTTTCCCTCAAGCATGCGTACTACAGCATGCCCAAGCCTCCCTTCCACGAGTGTCAGCGTATTGCCAAGGAGATTGGGCTCGACACACGTGTCGTGCAGGTCTGGTTTCAAAATCGTCGAGCAAAGGAAAGGAAAGGTCTAAACAATCCACTGCTACAATCCAGCGGTCGTAGATTAAAACACATGCGCTCGAAGACTTGGTCAGCTGGAATGCCATGTGCCACTAACCTGACTAATCAAATAGAAAACGATGATGCTGAGAGTGATATATCTGATCTCAGTGACCAATCACAGTGCAATAACTGGAAAACCATCCACTGCTATAACCAGTCTCCACCACTCTTCACAGACCAGCAGTTTGATTTCCCGTCCCTGCCTTCCATGCCAATTACTGAATCAAGGATGGTGGGACTCCAGTGGCAGGTTCCTCATCTAGTTAGTAGTGGGGGACTTAGTGGCGCTATAAGGAGTCCTTTTAGGGAAGCACCAAACTTGCAAAATAGGATTGACGAGTTTTCCAATGATTCAAGGATGTTTTACGATGAAAGTGATATGGCCTTCAATCCAAGTTCTTCTTTAATATAA

Transcript

gene15263.t2

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47510	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-