Gene detail

Detailed information of gene14704.t1 in Actinoscyphia liui

Genomic Location: chr4:19985568...19998549
NR annotation: XP_028512753.1, uncharacterized protein LOC114574426 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

gene14704.t1

ATGAGGGTCTTTGTTATCATTTTGGCTATAGTGGGGGTCCTGTTAGTGGAATGTACAGCAAAGAAAACGCGAAAGAAAAAAGGAAAAACTGTTCCTTCACAGCATGATAGTTCTAATGGTAAACGAGTACTAATTCCAGGAATTTACCCACCCATACCATTATTAACACCAAATACTTCAGTTCTCCATGCCGCAACAGTCGGTGCTTACGCGGGAGCCAAGGCAGGAGCAAGCAGTGGTGCACATGCTGGAGCCAAGACGGGAGCAACCGCAGGCGCTGAGGCAGGAGCAACAGCCGGGCTGGAAGCAGGAAAGCAAGCAGGAGAAGAAGCCGGCAAGAGAATAGCACATGAAATTGCCTTAGAGACCATACAAAAGATCCTCTTGACTATGGCAGGCCCAGGCCACACTTTGAACATCTTCGCAAATGCTTCAGCAGGAGCAGGAGGGAAAGCTCAAGGAGGAGGAGGAGGAGGAGAAGAAGGAGGAGGTGGGGGTGCACAAGGAGGAGGAGCAGCTGGTGGAGGTGCCGGTGGTGGTGCTGAAGGTGCTGGAACTGGTAACGCCACTGGAAGTGGTGAAGCTGGCGGCCAAGGTGGTGGTACCGCTGGTGGGGGCGGTGCCACTACTGGTGGGGGCGGTGCCACTACTGGTGGAGGCGGTGCCACTACTGGTGGAGGCGGTGCCACTACTGGTGGAGGCGGTGCCACTACTGGTGGGGGCGGCGGTGGTGGTGGTGCTGGTGGTGGCGCTGCTGGTGGTGGAGGTGCTACAGGTGGTGCTACGGCTAGTGGTGGTGGTACAGTTAGTGGCTCTTCTGGGGTTGCAGTTGGTGGTGGTGCGAGTATAGGGATTGGAACAAGTACTGGTATCTCAGCAGGCAGTGGAGTCCAAGTATCTGTTGCGTCAAGCTTTTCTGCTGCAGCGAATGCTGCCGCAGTTCAAGCAAGCAGTGTGACTGGAGCAGGAATAAAAATAATGGACGGAGCTATGTACTTCATTTACTCCATCAACACTCCAATGATGCAAGTCTTCACCAACAACTACTGCCTACGAGCGAACGGAATATCTTTGTATATGGCCCAACGTTGCCAATACTTCATTGCGCATGTTCCAGGACTTAATATAGACCCGGATACTGTTTCTTTTGAGTCGGTCTGTGTGCCTGGCTCGTACATCGTACAGAGAGACTACCGCTACATATTGATGAAGCATGACTTAGACAAAAATTTTGTAAAAGAGGCAACACTCTACATTCGTCGCCACACAGAGCTCCAAGAGACATTCTCCTTTGCTTCGTTTCACGATGGATGGTACTTCGCAATTGGAAGTACGATCGGCGAAGGGTACTACGAAGTCAAGGTTGCCTATAGTAACAACACCAAAGAATTTGACATGCAAACGTCATTTGTCCTAAAGCCTTATAAGGAAGGTGACCCTAATCAATACTGTGGCGAGGAAAAGATCATTCCAACAACTATACCACCAGTTCAAACAAGACCAACTTTAGTTCAACCACATAAATGCGTCGCCTTAAGATTCAAGAACGATGTTGGTATTACCTTCAAAATCTTCTCCAGTCTGAAGCACGAAGGTTGGACTGTCAATGGCCAAGAATACAAAATGAATTTTACGTTCAAGCGACCAGAGCTGCATAACTTTATTAACTTCCGAGCCCATGATCCAAAAAACAAGATGAAGATTTTACTGGATGGAGACACGTCCATTTCGGTTGTACCAACAGACGATTGTAGTAACTATATTGAAGTGGAAGCTACCGGTATTCCAGTGGTAGTGAAACCTCCTGTAGTACCTCAAACCAAAGCGACAACTACACCAAGCACAATAACTACAGTACAGCCACCTACTACGGAACCAGCTATACCCCCACCTCCTTCACCTCCCATCGGTTCTGCACCACCCCCACCCCCTACCACTGTGCCTACTACCATGCCACCATGCAGACCTCCACAGGTGTGTCCAGCTCCAACTCCTGTTCCTGTTCCTGTTCCTACACCACCTCCGAAACCAGCAGGTCCAGGAGTTCACTACCATATACATTACCACAACACACCTAATGTTACGCCTATCATATGCCAACAGCCGGCATGCATTGACCCTTGTGGACAATCCTGCCCCCAACCAGCATGTTGTAATAATAATATTGCAAAGAGATCCATCGAACCTGAAAGTGAAAAGAAAAGTTGTTCTTGTACGTTTGATTGTGGATCGGATAAGCCGGACAGCGAAGTTGAACAATGCGACGAGAAATGCCACTGTACACCAGACTCGGAAAGAAAACCCGAAATACTGAAAAACCACCATAGAAGGAACCCCAAGGATATCGAAAAAAAGTCAACCAGGCCAAATCACAAAGAAGTCAAGAGTAATTCATCGCAAACAGACTTGAGCAAAGAGATAAAGAACAGTAAATTACAGCCCAGACTTAAGCACACTGAAAATCAACGGAAAGTTTCCAAAGAATTGTCAATGAGTAATGCACGTCACGAAGACCCAAAAAGTGATACTACCCAAAAAACTGGAGATCATAGTCTCGAGAGCGCGCGTTTTGCCTTCATTGAAAAAATGCTAAAGAATTATGAGTACTATAAGAATAAACAGAAAGAGTTGGTTACACTACAGAAGCATAACTCGAAACTTAAGAAACAGAAAACATACCTACAAAAGCTTCTAAAATCTAAATCTAAGAGTAAGAAAAATCACGAGGGGAACGGAAAATCAAGTCATTCCAAAAAGATTCACAAACTGAAAGACAAGGGGAAAGCTACAGATTTTCTGGTCGAAAAAATTGAAGAACAACTCGAGAGAGTGGAAGCACAACAAAAACAAATCCTCAATGCTCACGAGCTCCTCTTACAACAAGTTCAACGAGAAAAGAACTTCCTTGGCAAAATGAACCTTGCAGTTCAGAATGCGAGTGAGGAGGTTCAGTTTCGTCAGGACACTGAAGGGCATGTTCCAGACAACGTGATGAATGCGTTCATGTACGACCCTCAAAAACAGTATCAAGAATCCATGCGAAGATTCATGGACATGAAAAAACAGGAACTGATCGACAGACAAGTTGGTTTACAGGAAATGCAAGAACAACGCTATCTCACTCCCGACGAAAAGGCAGCAATGTATAACAGTAATGAGAACTATGAAGAAGACCAGTCGGCCAAGGATTCGAATTCACCAATGTATAGAAACAATATCGACAATTTCGATGAAGATCGTTTCAAGGAATCGATTGTTGGTACAAATGGTAATCAGGCTTCTTTGTATAATGGTGATGATAATGGTGACGATGAAGAAGAAATGTTACAGCAGTATCAGAGAATGAGAAGTTGGTACGGACCGATGCAAGACTTCAGTAACGATATTAATGATCCTAATGATACTGATGCAATGTATGGATAA

Transcript

gene14704.t1

CAAACATAACACCTTTTGAAAACATATTTATATTATCTAAACAACACAGTTTTCCATGATTCGCCAGGACTGAGCGAATGAGGGTCTTTGTTATCATTTTGGCTATAGTGGGGGTCCTGTTAGTGGAATGTACAGCAAAGAAAACGCGAAAGAAAAAAGGAAAAACTGTTCCTTCACAGCATGATAGTTCTAATGGTAAACGAGTACTAATTCCAGGAATTTACCCACCCATACCATTATTAACACCAAATACTTCAGTTCTCCATGCCGCAACAGTCGGTGCTTACGCGGGAGCCAAGGCAGGAGCAAGCAGTGGTGCACATGCTGGAGCCAAGACGGGAGCAACCGCAGGCGCTGAGGCAGGAGCAACAGCCGGGCTGGAAGCAGGAAAGCAAGCAGGAGAAGAAGCCGGCAAGAGAATAGCACATGAAATTGCCTTAGAGACCATACAAAAGATCCTCTTGACTATGGCAGGCCCAGGCCACACTTTGAACATCTTCGCAAATGCTTCAGCAGGAGCAGGAGGGAAAGCTCAAGGAGGAGGAGGAGGAGGAGAAGAAGGAGGAGGTGGGGGTGCACAAGGAGGAGGAGCAGCTGGTGGAGGTGCCGGTGGTGGTGCTGAAGGTGCTGGAACTGGTAACGCCACTGGAAGTGGTGAAGCTGGCGGCCAAGGTGGTGGTACCGCTGGTGGGGGCGGTGCCACTACTGGTGGGGGCGGTGCCACTACTGGTGGAGGCGGTGCCACTACTGGTGGAGGCGGTGCCACTACTGGTGGAGGCGGTGCCACTACTGGTGGGGGCGGCGGTGGTGGTGGTGCTGGTGGTGGCGCTGCTGGTGGTGGAGGTGCTACAGGTGGTGCTACGGCTAGTGGTGGTGGTACAGTTAGTGGCTCTTCTGGGGTTGCAGTTGGTGGTGGTGCGAGTATAGGGATTGGAACAAGTACTGGTATCTCAGCAGGCAGTGGAGTCCAAGTATCTGTTGCGTCAAGCTTTTCTGCTGCAGCGAATGCTGCCGCAGTTCAAGCAAGCAGTGTGACTGGAGCAGGAATAAAAATAATGGACGGAGCTATGTACTTCATTTACTCCATCAACACTCCAATGATGCAAGTCTTCACCAACAACTACTGCCTACGAGCGAACGGAATATCTTTGTATATGGCCCAACGTTGCCAATACTTCATTGCGCATGTTCCAGGACTTAATATAGACCCGGATACTGTTTCTTTTGAGTCGGTCTGTGTGCCTGGCTCGTACATCGTACAGAGAGACTACCGCTACATATTGATGAAGCATGACTTAGACAAAAATTTTGTAAAAGAGGCAACACTCTACATTCGTCGCCACACAGAGCTCCAAGAGACATTCTCCTTTGCTTCGTTTCACGATGGATGGTACTTCGCAATTGGAAGTACGATCGGCGAAGGGTACTACGAAGTCAAGGTTGCCTATAGTAACAACACCAAAGAATTTGACATGCAAACGTCATTTGTCCTAAAGCCTTATAAGGAAGGTGACCCTAATCAATACTGTGGCGAGGAAAAGATCATTCCAACAACTATACCACCAGTTCAAACAAGACCAACTTTAGTTCAACCACATAAATGCGTCGCCTTAAGATTCAAGAACGATGTTGGTATTACCTTCAAAATCTTCTCCAGTCTGAAGCACGAAGGTTGGACTGTCAATGGCCAAGAATACAAAATGAATTTTACGTTCAAGCGACCAGAGCTGCATAACTTTATTAACTTCCGAGCCCATGATCCAAAAAACAAGATGAAGATTTTACTGGATGGAGACACGTCCATTTCGGTTGTACCAACAGACGATTGTAGTAACTATATTGAAGTGGAAGCTACCGGTATTCCAGTGGTAGTGAAACCTCCTGTAGTACCTCAAACCAAAGCGACAACTACACCAAGCACAATAACTACAGTACAGCCACCTACTACGGAACCAGCTATACCCCCACCTCCTTCACCTCCCATCGGTTCTGCACCACCCCCACCCCCTACCACTGTGCCTACTACCATGCCACCATGCAGACCTCCACAGGTGTGTCCAGCTCCAACTCCTGTTCCTGTTCCTGTTCCTACACCACCTCCGAAACCAGCAGGTCCAGGAGTTCACTACCATATACATTACCACAACACACCTAATGTTACGCCTATCATATGCCAACAGCCGGCATGCATTGACCCTTGTGGACAATCCTGCCCCCAACCAGCATGTTGTAATAATAATATTGCAAAGAGATCCATCGAACCTGAAAGTGAAAAGAAAAGTTGTTCTTGTACGTTTGATTGTGGATCGGATAAGCCGGACAGCGAAGTTGAACAATGCGACGAGAAATGCCACTGTACACCAGACTCGGAAAGAAAACCCGAAATACTGAAAAACCACCATAGAAGGAACCCCAAGGATATCGAAAAAAAGTCAACCAGGCCAAATCACAAAGAAGTCAAGAGTAATTCATCGCAAACAGACTTGAGCAAAGAGATAAAGAACAGTAAATTACAGCCCAGACTTAAGCACACTGAAAATCAACGGAAAGTTTCCAAAGAATTGTCAATGAGTAATGCACGTCACGAAGACCCAAAAAGTGATACTACCCAAAAAACTGGAGATCATAGTCTCGAGAGCGCGCGTTTTGCCTTCATTGAAAAAATGCTAAAGAATTATGAGTACTATAAGAATAAACAGAAAGAGTTGGTTACACTACAGAAGCATAACTCGAAACTTAAGAAACAGAAAACATACCTACAAAAGCTTCTAAAATCTAAATCTAAGAGTAAGAAAAATCACGAGGGGAACGGAAAATCAAGTCATTCCAAAAAGATTCACAAACTGAAAGACAAGGGGAAAGCTACAGATTTTCTGGTCGAAAAAATTGAAGAACAACTCGAGAGAGTGGAAGCACAACAAAAACAAATCCTCAATGCTCACGAGCTCCTCTTACAACAAGTTCAACGAGAAAAGAACTTCCTTGGCAAAATGAACCTTGCAGTTCAGAATGCGAGTGAGGAGGTTCAGTTTCGTCAGGACACTGAAGGGCATGTTCCAGACAACGTGATGAATGCGTTCATGTACGACCCTCAAAAACAGTATCAAGAATCCATGCGAAGATTCATGGACATGAAAAAACAGGAACTGATCGACAGACAAGTTGGTTTACAGGAAATGCAAGAACAACGCTATCTCACTCCCGACGAAAAGGCAGCAATGTATAACAGTAATGAGAACTATGAAGAAGACCAGTCGGCCAAGGATTCGAATTCACCAATGTATAGAAACAATATCGACAATTTCGATGAAGATCGTTTCAAGGAATCGATTGTTGGTACAAATGGTAATCAGGCTTCTTTGTATAATGGTGATGATAATGGTGACGATGAAGAAGAAATGTTACAGCAGTATCAGAGAATGAGAAGTTGGTACGGACCGATGCAAGACTTCAGTAACGATATTAATGATCCTAATGATACTGATGCAATGTATGGATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05270	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007934	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan
IPR036195	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23361	MUCIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046373	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15589	ARNT2; aryl hydrocarbon receptor nuclear translocator 2	-	Transcription factors	ko03000	deepkoala