Gene detail

Detailed information of gene14425.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene14425.t1	PROTEIN CBG26694	chr4	14591798	14603365	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene14425.t1

ATGGACCTCAGGCTCTATCCATTTGATGTTCAGAAGTGTAATTTGATTATGGAAAGCTATGGATACAGTATTGATGATATCATTTATGAATGGGAAGCAGACGAAGGTGATGGGATGATGTTTGTGCCAAGTGATGCTCAAGTACTACCACAGTTTAGACTGACTGATCTCCAGTTGACCACAGATCACACGCAATATGTTATAGGTAACTGGTCAGGAGTCGAGGCAACGTTTACCTTTGAACGAACCTATAGTTTTTACTTAATTCACATCTACGGACCAAGCGCATTAATTGTGGTGATATCTTGGATTTCGTTCTTACTACCTCATGAACAATCGCCAGCACGTGTCACGCTAGGTGTCACGTCACTACTGACTGAAGTCACGATACTTACTATGTCAAACCAAGCTATACCAAGAGTGAAATTATACAAGGCTCAAGATGATTTGATAGCAACAACATTGAACATTGACTCCAATGATAAACCAAAGAAGTTCTGGTCTTATATAAAGGCTAAGAGACAGGATCAGATTGGGGTTCCACCCTTACAAAGTGATTCAGGTCTTAAGGTTGATAGCCTTAGTAAAGCTAAAACTCTGAATGCTCAATTTCAACAAGTATTTACACAGGAAGATGTATCATCTACTCCCAATAAAGGCTTCGGTGGTTCAACATGTACGAAAGAAAAGTATCAGGAGGTAGTACAAGTGCTGACTACATACTTTCAGCCGAAAAAGAATAAATGGGCTGAACGATATAAGTTTAGAAAGAGGTTTCAGGAACAGAATGAACAGCTTGACACTTTTATTGCTGAGTTGAGAGTGTTATCCCTCTCATGTGACTTTGGAGAAGCAGTGGAGGATAATATCCTGGGCCAAGTCATTGAGAGATGTGCAGATGGATATTTGCGTGAGAAACTGCTCCAACAAGGAGATGGTTTGACATTACTAAAAGCCCAGACTCTCGGAAGAGCGATAGAACAAGCGAAAAAGGATACCGTTTTACTTGGCGGACAGAAGCCACAGAATACTGCAGAGATCAATCAAGTACAGAGGAGGGATACAGCAACTCCATCAAGACAGAAAGGAAAGAAATGTTACAGATGTGGTAGAGATGATCATCTAGCCAATGATGTGAAATGCAGAGCAAAGGAGGCGCAGTGCAGGAGGTGCAACAGGAGAGGGCACTTTGAAAAATGTTGCAGGTCTGCAGTTGGTGAGAAGCTTGAGGACAAGGTGAAGACTATACAAGAAGACAGTCAACCAGACGATGAGTATAATCATGAATATGTGTATTTAACTAACAATGAGGGGGGTACCGACTTTACAATTGATGTGGAAATAAATGGGAAATCTATTCAAATGATTATTGACACTGGGTGTGCGAGAACATTGATCCCAGAACAGTGGTTCAAGGCAAATATTGACAGCCCCTTGAAGAAGACAAATGTCAAGTTCTCAGTCTTTGGAGGGGGGCTAATCAATTGCCTGGGAACATTTGATGGGACAGTAAAATGCAATGGTCAAGAGATAGCAGAGCCAGTGTTTGTGGTTGATGTGGAGGGCCCTCCATTAATGGGAAGGAGTGCGATTTTGGCACTCAATCTGGTGAAAATCCATGCTGTTGGGGAGTCCCTGGGCAGCAAGAGAGAAAGTATTTTGCAGGAATTCAGCGATGTTTTTAATGAAGAATTAGGAACATTCAAAGAATATGAGTATGAGATCCGTGTGAACCGAGATGTACCTCCAAAAGCACAGCGACAGAGACCAATTCCAGCAATGTTAGAATCCAAGCTGAAGGCTGAAATTGAAAGAATGTTGAAGGAGGATGTGATTGAAGAAGCAAAGGGAGCATCATGGATTTCACCACTACATATTGTCTATAAAGGAAATGGAGAGTTGAGAATATGCGTCGATTTAAGAGAAGCAAACAAGGCTGTCATTCGTGAGAGGTTCCCTATCCCTCGGATTCAAGATATTCTTTGGCAGCTGAGTGGTGCACAGATGTTCTCAACTCTTGACTTAAGGAAGGCGTACTGGCAGATACGTCTCTCAGAAGACTCGAGAGAGATTACATCGTTCATGGCAGCAGGGAAAGTCTACCAGTTCAAGAGACTTCCCTTCGGGTTGGCATCAGCCCCAGAGGCATACCAGAGAGTGATGAGTATTGTGTGCGAGGGTCTGGCTGGCGTACTGAACTATTTTGATGATGTTGTTGTATATGGAGCCACCCCAGACGAGCACTGGATAAACCTATGGAAAATACTGCAAACCCTAAAAGAGTCAGGGCTACGACTAAATGCAAAGAAGTGTGTCATGGGTGCTACTGAGCTGAAATTTCTGGGTCACATAATATCAGCAGAAGGGATCAAGCCTGACCCAGAGAAAGTGAAGGCCATCACAGAGGCACCATCACCACAAAATGCATCTCAGCTGAGATCGTTTCTAGGTAGTATTACCTACTTGACGCAGTACGTACCAAATCTAGCCACAGTCATTGCCCCATTGAGAAAGTTGACACAGAAGGGAGTACCGTGGAGTTGGACCCAGAAAGAAATGACAGCGTACAAGAACGTAAAGGAGCTGCTAACGAAAGCCCCTTGCCTGGCCCATTATTCAATGACGGCTGAGACGAAACTAGTGGTGGATGCAAGTCCATATGGACTTGGAGTTGTGCTGATACAGAGGAGCGCAAATGAAATGCGTCCAGTTGCTTATGCATCACATGGTCTAACTGATGTGGAGAAACGATATGCACAGATCGAAGCGTGA

Transcript

gene14425.t1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR006028	Family	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	Interproscan
IPR006029	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036719	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR038050	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-