Detailed information of gene13123.t1 in Actinoscyphia liui

Genomic Location: chr3:61982833...62002478
NR annotation: XP_031570089.1, protein CLP1 homolog [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A7RG82Protein CLP1 homolog OS=Nematostella vectensis OX=45351 GN=v1g236308 PE=3 SV=1
A2VE01Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Bos taurus OX=9913 GN=CLP1 PE=2 SV=1
Q92989Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens OX=9606 GN=CLP1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16575CLP1_PmRNA cleavage and polyadenylation factor CLP1 P-loopDomainInterproscan
PF16573CLP1_NN-terminal beta-sandwich domain of polyadenylation factorFamilyInterproscan
PF06807Clp1Pre-mRNA cleavage complex II protein Clp1FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045116FamilyPolyribonucleotide 5-hydroxyl-kinase Clp1/Grc3Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032319DomainPolyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domainInterproscan
IPR038238Homologous_superfamilyClp1, C-terminal domain superfamilyInterproscan
IPR032324DomainClp1, N-terminal beta-sandwich domainInterproscan
IPR010655DomainPre-mRNA cleavage complex subunit Clp1, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12755CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1PInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0051731Molecular Functionpolynucleotide 5'-hydroxyl-kinase activityInterproscan
GO:0031124Biological ProcessmRNA 3'-end processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14399CLP1, HERB; polyribonucleotide 5'-hydroxyl-kinaseEC:2.7.1.78
Messenger RNA biogenesisko03019deepkoala

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