Detailed information of gene12708.t1 in Actinoscyphia liui

Genomic Location: chr3:54733897...54738113
NR annotation: XP_020894910.1, probable ATP-dependent RNA helicase DHX37 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8IY37Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens OX=9606 GN=DHX37 PE=1 SV=1
O46072Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster OX=7227 GN=kz PE=1 SV=1
P34305Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans OX=6239 GN=rha-2 PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007502DomainHelicase-associated domainInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002464Conserved_siteDNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR011709DomainDEAD-box helicase, OB foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14780DHX37, DHR1; ATP-dependent RNA helicase DHX37/DHR1EC:5.6.2.6
Ribosome biogenesisko03009deepkoala

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