Gene detail

Detailed information of gene12699.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene12699.t1	PROTEIN CBG26694	chr3	54537321	54541792	-

Gene Structure

More details in Jbrowse Sequence

CDS

gene12699.t1

ATGTGTCGTTACAAGTTCATATCAATTGCTCTTTTTTTAATGTGTTTTTTAACACTGATCGAGAGAAGTAGAGGAGGAGATGATGATGATTCACCTAAAAATGCAGAGATCAAGCCTTCAGCTCAGAGGAGAAATCTACCTCTTGATGATGCCGAATACGAAGCTCTTTTTTCTATACTGACCGGGCAACGGTGCTTTCAAGACTGGCCAAAGAAACAGAACAGTGCACTTCGGCAGCGGGTGTACAAAAAGTGGATGAGTGGCGAATATGAAGTACGGGAAATTCATGAACCTTTGAATGGACGCACTACCAGCCGAATTGTTCATAAGAAATCAGAGAGTATTGTGGTCAAGAAATCAGAAATTTCATCCGTTATTGAAAATTTCTTTGTGGAAAGAAAAGGCGAGGGAGCTGTAAAACTGTCCTCGTGCATTAGCCATGTGTATAGAGGAATATCACGGAAATGTATTCAGTCGAAATTAAATGTAATGAAGGAGCCTCAGAAAGTCCGACCTCTATTCCAGAATAAAGCCCCTCTGCGTCCCATTAAAGCGAAGAAAGTTCAAGAACGTCATCAGGTGGATCTTGTCAGCATGATAGGCATGCCAGTAACAACGGAGTGCGGCAAGACCTACAAATACATCATGTCTGTCATTGACATATTCAGCCGCTTTGTTTTCTTGCGACCTCTGGCGTCGAAACAATCGGCCGAAGTTGCCATACACCTGCTGGAGATCTACAGCGAACACGGCCCTCCAGAAATTTTGCAGAGTGATCAGGGTACCGAATTTAAGGGTGTCGTTAAATCAGTCTGCGAAAGTTTAAATGTGCGCATAATTAAAAGTTCAGCATATCACCCGCAAACCCAGGGAAAAGACGAGCGGTCACACCGTACTTGGAAAGAAAAATTACAATTTGATATCCTTAATTGTAACGATGACTTAAACTGGGTTGAACGCCTTTCCAAATACCAACAACTTTACAATGAATCTCCGCATAGTTCACTTGCAATGCTCAGCCCTTTTGAAGTGTATTACGGGAGGCCTGCAAACACGCTCAAGCGTAAACTCTCGTTAGGACAAAAAGTAACTTTTGAAGTACCTGAAGAGGGTGCTGAAGAGGTTGCACAATTCCATGCCGCAGATGACCCGGATCTAAAGGTAAGAATGCAAGACCTGACATCTATCAGAAAGAAGGCGTTAAGAGGGTCGGATGCTGCTGCGGAGAGGATGGTTAAACGAGAACTTAAGAGAAATCCCCCTTCATTATATTTTAAAGGAGAAAAGGTTCTCATAAGGATTGCTAAAGCAAGGAAAACAGTCAAAGGGAAAAAGGCAAGTTTAAGGCGAACATGTGAATGGGTGATTTTAGAAGCAGATCATACTAATCACAAATACCTTGTCCAATACGATGGTTCCACTAATCCGTCGATCTGGGTGAAAGTGGATGATATTACTTCTCTCACAAAAGAGGAGGAGAATGAGAAGCAGAAAGCCGCCAGGTCCAGTTTAAGTAAAAAGTCTGAGAAGGATTTAGATTTAAATGAAGTACGTGAAGTGGGAAGGAACGTTTCAATTAGAAATGTGAGTGTTCTTGACGCAAGCATTGAGGAAATTTTGGCAAACAGGAAATTCAGTGGGGACACCATGAATTTGTACTTTGATTTCTTGCGTCAGAAAGGTGTCTGGACAGCGACATCATTTTCATTGGCTTCGTCCTACTTTTACCCTTCTCTTATGAGAGAACCGACGACATACAGAAAACACATCGGAAACGATGCACTACGAGACTTTGAACATCTAGTAGTACCTATTAACTTACCAAAGGAAGATCACTGGTTACTTGCAGTTCTGAGCGTAGTTAGCTTATGTATTTATATCTACGATTCATATGATGGCACAGACGGAGAAACATATAGAATGGTGTTTAATACCTTAAAGAACAATTTTATATCTAAAGAAAGACAGTATTTAACGGAAAACAGGAAAGAGGAACTGCACGAACAAAACTGGACAGAGAAAATTCAGACTTGCCCAAAGCAAAAAAACATCACAGATTGTGGGCTATTCACCTGCCTTTTTACTAAGAATTTATTAACAACCAAGTTCGTAGATTGTAATTCTCCTAATGGTATGTCTCGCAGTGAAATAGTCAGTGATTTGTGTGAGCTTGCTTCTGCCTCTACTAACCACAATGACACAGCTCAGCCCTCCTATGTTCCAGATTGGCTCTTCTCAGAACCGCCCCTAGACATTGACAATGAAATGTCAAAACTTGACATTGAAGTTGCCAGTGCTGGACTGGCTTATCGTCAACCCCCAACACCTAAGGATGGGAATTGCTTGTTCCATGCCATATCCGACCAACTTGTTCGATTGAGGTTGCCCGCACAGACTGCGTCAGAATTAAGAGCAAACTTAGTGGAATTTCTGCGGAGAAATCCAACGACACCTGACGGACACCATCTCAAAGAGTTCGTCGCATATAATGCTTGGGAATCATATTTGAGGAAGATGTCTCAACCTGGAGAGTGGGGGGACTGGATTACACTCTGGGGACTTATAAATATGTTATCAATTGACGTGGCAGTGGTTTCTAGTTTGGGGAAAACTGGACTAAGGATCATAAGCCCTTCATCCAGCTGTGCAAAAACCGGAAGTCTAGAGGGCATGGCCTTGCTTGGCCACGAAGCAGAGGCCCACTACCATTCCTTAGAGCCCGATATACTAACGGATGGCCACAACATCAACATCTTAAAGGCAAAATATGGAGAAGGTGAAGTCACAGAAGAAGTGTGCACTCGATGTAATAAGTTGTTTCAGAGCGTTTCTGCAGGGGTGCATGTGCACGAGAGCGGAGCCATACAGTGCTATTCAGATGACCAGTCCCTCTGTGATTTATGTCAATACGAAGAGTTCCATCCAGTCACAGATTAA

Transcript

gene12699.t1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU
Ubiquitin Family	DUB\|ULP\|ULP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF02338	OTU	OTU-like cysteine protease	Family	Interproscan
PF02902	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR003323	Domain	OTU domain	Interproscan
IPR003653	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-