Detailed information of gene12034.t1 in Actinoscyphia liui

Genomic Location: chr3:43647384...43672603
NR annotation: XP_020898753.1, syndetin isoform X2 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q96JG6Syndetin OS=Homo sapiens OX=9606 GN=VPS50 PE=1 SV=3
Q8CI71Syndetin OS=Mus musculus OX=10090 GN=Vps50 PE=1 SV=2
F1LSG8Syndetin OS=Rattus norvegicus OX=10116 GN=Vps50 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10475Vps54_NVacuolar-sorting protein 54, of GARP complex RepeatInterproscan
PF10474Syndetin_CSyndetin, C-terminalRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019515DomainVacuolar protein sorting-associated protein 54, N-terminalInterproscan
IPR019514DomainSyndetin, C-terminalInterproscan
IPR040047FamilySyndetinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13258UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000149Molecular FunctionSNARE bindingInterproscan
GO:0032456Biological Processendocytic recyclingInterproscan
GO:0042147Biological Processretrograde transport, endosome to GolgiInterproscan
GO:1990745Cellular ComponentEARP complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23288VPS50; syndetin-Membrane traffickingko04131deepkoala

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