Gene detail

Detailed information of gene11918.t1 in Actinoscyphia liui

Genomic Location: chr3:41986206...41996306
NR annotation: XP_020917239.1, arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene11918.t1

ATGATTCGACGAAGTTTTCAGCTTTCTGGGTCGTACGATGTTATCAAAGATATCACTGATTTAGAAGCAATTGAGAAGCTAATTCAGTCCAAAGAGGTTCCTGTTTTGACGTCATATGACCAAGGTACTTCTCCTGTATCAAGAGATGGAGAACAAAACAGTGTTCATTCTACAAGTCCTGGAAACAGTGCGAACAACAGTCTTGCATCCACACCAGCCTCTACAACGAAAAGATCTACAAGAAGACGAACTATGTTATTCTCTAAAGATAAAAAGGAAAAGGAGGTTATTATAGACACTGATGTGGGAAGTGGGCGCCACATTCCTATTAAGCAGGGGTATCTTTATAAAAAGAGTGCAAACTCAATCAAACAAGAATGGAAAAAGAAGTATGTTACTCTGTTAGACACTGGCAAGCTTGTTTATTACCCTAACTTACATGATTACATGGCAGAAGTTCATGCCAAAGAGATTAATCTCAAACACACTACAGTGAAGATACCTGGTCAACGGCCACCAAAAGCACTGAGTATGAGTATTACATCTGCATCTACAACACAATCACAAGCATCAGATTCACGGCCAACAACTCCTGAGTTCTTAACAGAAAACAACAACAGCGGGATGGATTCTTTAGGCAAAAATGCTACCGTTATACAAAATGGACTTGCATTAGAGTGTTCACAAGTAGATGGAATTGATCTAGAAGCATCAAGTAACCAAGTTAACACCGCTTGTTTTAATACGAGTAATATAAACAAAGCAGAACAAAATTCATTGAATGTCGTCAAGAAGAAAAACAAGAGAAGTAAACATACAAAATCGTGTGAAATAGACTATGAGGAGCTCGAGAAAGCTCTGGCTTCAGCTGCAGCCAATATTGTTATGCCACCAATTATGAGAAATGAATCACATAACTCTAGTCTTAAGAAGAAGGGACATCGGCGAGCAAAGAGTGGTAGCGGCAAGTTTGATACAGATACAGAAAATTTAGATTATGAGTTTACAGTTATTTCATTGGATGGGAAATTCTGGAATTATGAAGCTGCATCCCAAGAGGAAAGAGATTCATGGGTCCAAGCTGTGGAACAACAAATATTATCATGTCTGCAATCCAACGACAGTGGCAGGGATAAGTCCCGTCTCAACAGTACAAATTCCTGTGAAGGTTATGACATCCAGTCAATCAGAAGAGTTCCAGGGAATGAGATTTGTGTAGATTGTGGAGCAGCAAATCCAGACTGGGCGTCACTAAACCTTGGTGCTCTAGTTTGCATAGAGTGTTCTGGTGTACACAGGAACCTAGGAACTCATCTTTCAAGGATCCGTTCTTTAGACCTGGATGACTGGCCGTTGGAATATACTGCCGTCATGTGTAGCATTGGGAACGAGCTTGCTAATGGGATATGGGAGGGGTCCTGTGATGAGAAAGATAAACCTAATTCCACGTCAACACGAGAGGAGAAGGAACGATGGATAAGAAATAAGTATGAAACTAAGCAATATTTGTGTAAGCTGCCACCGTCAGACTTCTCTCTTGGAGAGCAACTCTACGAAGCTGTATCCAGGGAGGATCTACCTCTTTGTATTCTACTACTTGCATATTCCACACCTCAAGATGTGAATACTGTGAGTGATGACCAGGACAAGTTGACAGCCTTACACTGTAGTTGTATGCTAGGAAACATTGTTATCACACAGCTTCTTATATGGTATTTCGCTGACGTCAAGGTTTTAGATGCCAACGGTCGCTCGGCATTATGGTGCGCAAAGGCTTCTGGGAGTAAAGAGTGTGCAGAAATACTACGATATAGTGGTTGTGATGACCTGGGGACCTTAACACCGCAGGCCGAAGACGTTATACTATGACCACGTGACCACCACGTGATGTGGTCTATCTTTGTGTTTGGGCTACCCTTGTGTTAGTTGACGATAAAGAGACTGGTAACCATAGAAACTGTTGCTATGGATAAATCGTCAAAAGAACAAAAAGAACTCAAAATAAAATATATTTATTGATTGTTTATTTACATACAAAGTGTATATATTGAAAGCTATGATGGATATTCAAATTCTTGCTAATTATATGGTGATTTTAGAATCGATTACTGTGAGTGACTATGAGAGAAGGCAGTATTTAAAGGTGAAATGTTTGTCAAAAGATAATTTCAGTAGCTTCTCCGTGGTAAACCTTTCATAACCAGAAAATCGTGTTTACAATAAATGGTTATTGC

Protein

Uniprot

Uniprot term	Description
Q8BXK8	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Mus musculus OX=10090 GN=Agap1 PE=1 SV=1
Q9UPQ3	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=AGAP1 PE=1 SV=4
Q6NRL1	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=agap1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01412	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR001164	Domain	Arf GTPase activating protein	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR037278	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR038508	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR051282	Family	Arf-GAP with GTPase, ANK repeat and PH domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45819	CENTAURIN-GAMMA-1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12491	AGAP; Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1/3/4/5/6/9/11	-	Membrane trafficking	ko04131	deepkoala