Gene detail

Detailed information of gene10615.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene10615.t1	UNCHARACTERIZED	chr3	23759435	23763124	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

gene10615.t1

ATGAATAGAAAATACATTGGAGATGTATGTTTTCAGTTGTATCGCCTGGCTGGAAGACATAAGCTCCCAACTCAAGGAAACCTTGCAAAGACAAGAACACTGTGTCACCTGTCTGTCGCTGCAAAACCAAAGGCAGACACCTCAAAGACGAAGTCGAAATCCAACAAAAAGCAGGTCAAGAAACGTCAAGCAGATCCAGTGCTAAAGCTAACACATGAACAGTCACAGGTTATTCTTCAAGAGCTCAACACAAGAACATTAGAGCAATTAACCAATACCAAAAACATTGGAAAGAACAAAGCAGAGGCGTTAATCCAGTACAGAGATGAGAAAGGTCCATTGGTGAACCTTGTGGAACTCCACAACATCAAGGGCTATGGTAAAGCATTCTTTACTTGGCTTGAGGACAATGGTGAATTACCTCCATCTACAAAAAAGTTCTCCAGGCAACATGAGATTCTCAGTTTAGTCATTTCTGATGATGAAAAACAGAAAATCTCTAATATAGTTTCAATAGACATTGGATTACAGAATGCTGCGTGGGTCCATATGGATAGAGAACACCAAGTACTAGCATGGCGACAAACTAGTATCTGCAAACCAAAGCCATATAACCCTGCATCCCTCAAGCCACAGGTCCAAGCATTTGTTGACACCCTTCCTCCAACAGATGCATACATTGTAGAAATGCAAAGCCATAGAGTTGGCAAACATGCAGTTGCTCTCCTACCATTTGTTATCCATCTACGTATCATGGAAGCGATGCTCCACTGCCTGCTAAAGTCACTTGTTATCCCACTGGACCCTCACTACACCTCAAAGTATTTTAAGCTACCAACTGGCCATTCACAGAAGAAAAAGGCTGCAGTTAGTTTGGTACAGAGTTTATTTCTCGAACGGAAAGAAGTTGCCTTCGAGGTTGAATGTGAGAACTTTTTAAAAGAAAAGTCTGGTTTAGAAGGGAGTGAACTCCTGGTGGAAGAACTGGTTACTAGTCCAGATATGTCAGGCACAGACGCACAGGCACCAAGTCCAACAAATACAACATCATCATCTTTGATGCCTGATTTCAATCTACAAATTTCTGAAAATCTCATTGAATATTTTCAGAATTGTAAGAAGAAAGACGATTTAAGTGACTGCTTACTACAAGCCCTGGCATTTTACAATTTACTGTCTGACAGTCAAGAGTAAAGCCTGGTTCTCATATCAGAATAATCGCTGATGATCATGGATTGTGGTGTTTCCCAATTGTCACAGATCGCACTACAATCCCCGATCGTCAGCGATTTGTCTGACATATGAGAACCAGGCTTAAATGTTCTATTATTGTATAATTATTTAAATCATAAATTCATTACTAAAGGCTATCATTTATGATAGATGAAGTGTCAGAGGTGTTGTTAGAGATTAATTTTCACTAGTGCTATAAGCATCATACTGTATATGATCTAAAGTACCTGGGACATTTATTGGAAGATTGATATATTGTATATGTAGTTATTATCAAATTCATTAATAATTCATGATCTATTAGTCCAATCATGGTTGTCCATTGTGGTCACATGCACATACCTTTAAATCCCAATAAAGGATTGATGTTTTATGCATCAGTTTCATTAACTTTGATAAAGATCTGATGAATAAAACGTCCAATCTTTATCAAAGTTAATGGTGCTGATGGCACAAAACACTAGCAAAGGTCTCAGTTTTAATATCGCATTATCGACCTTTGGCGGTTTTTCAAAACATCTAATTATGCTAGCGGCTTCCTAATCTACCCTACATGACCTCTTTCTAATGTGGGATGTCAAGTGCAGCACAGTGCGCATGATCGTGATGTAACAATCACCTCATTGCTAGAAATGTGCCTTAATCTTGGACTTTTCTTCAAAAACTAATTAGTAAATGAGTTTTGAATGAATGTTGGATTTGATAAGTAATAAAACTCATATTTTATATATTACATAAAAATCTACTAGTGTTCTATTGTAAATCTCGCATTCTGATTGGCTAACGTACTTGATATCTATCGGAGAAAACGGATGCTATTTTTCAGAAAAAAAGCTTAAAAAAATTACCAAATTGCTGTTGTTTGCAATAGAACACTAATAGATTTTTAATAAAACAATAATAGAAGGTGAACTCAAGATTTCTGTCGGCAGATAGAAATGGGAAGATTTGGTTGTAAAGAAATTTTTATTTTTTTCCTTTTATTATTAACACAAGAATCAGAATTTAAAAAATTGTCTTGATACATATAATGGCTTTAAAAAATATATTATTACATGTTTTTTAAATGTTGTTATAAAATCTAGATTATTATTACTATGATTTAGTTAAAGCTTCCTTCCATAATTTTGTGAATCTTATTCATCTTCATGACGTTGTCCTCTGGCAAAATTCAAGAACACTTGATCAAGAGTTGTTTGACTAATGGTGTAATCCTCTATGTCATAATCAAGTTTAACTTTTTCTACAGCACCAAAGATCTGAGCCCACGTCACTGTAGTGTCGGTAATGTGGTAGTGCACCATGCCGAGATGTTCATCTTTAAGTACACTTCCAGGGAAGCTTTCTTCTATGAACTCTTTCAGTTGAGTTGTGTCGGCGCCGCCAACTTTAGCTATCAGGGTGTAACCTTCGCCAAACTTAGTCTTAAGGTGCTGCGGGCTGCCCAGGCATTTGAACCGACCATTGACCATAATTGCAATCCTGGTGCAAAGGGCATCACATTCTTCCATACTGTGAATTAAACAACAACAATAATAATAAATAATTGGATTTATGAAGTGCCTATCCAGATCTGCTCTAGGTGCTGTGATAAACAAAATGATAAAAATTTAGAAATTAAAACAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09159	Ydc2-catalyt	Mitochondrial resolvase Ydc2 / RNA splicing MRS1	Domain	Interproscan
PF12836	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010994	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR015242	Domain	Mitochondrial resolvase Ydc2, catalytic	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR039150	Family	Transcription elongation factor, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21053	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006390	Biological Process	mitochondrial transcription	Interproscan
GO:0006392	Biological Process	transcription elongation by mitochondrial RNA polymerase	Interproscan
GO:0030337	Molecular Function	DNA polymerase processivity factor activity	Interproscan
GO:0042645	Cellular Component	mitochondrial nucleoid	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-