Detailed information of gene10526.t2 in Actinoscyphia liui

Genomic Location: chr3:22719922...22733354
NR annotation: XP_028514590.1, U3 small nucleolar RNA-associated protein 6 homolog [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8VCY6U3 small nucleolar RNA-associated protein 6 homolog OS=Mus musculus OX=10090 GN=Utp6 PE=2 SV=1
Q9NYH9U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens OX=9606 GN=UTP6 PE=1 SV=2
O60188U3 small nucleolar RNA-associated protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp6 PE=3 SV=1
 Gene family
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05485THAPTHAP domainDomainInterproscan
PF08640U3_assoc_6U3 small nucleolar RNA-associated protein 6FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013949FamilyU3 small nucleolar RNA-associated protein 6Interproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23271HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034388Cellular ComponentPwp2p-containing subcomplex of 90S preribosomeInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14557UTP6; U3 small nucleolar RNA-associated protein 6-Ribosome biogenesisko03009deepkoala

TOP