Gene detail

Detailed information of gene08552.t1 in Actinoscyphia liui

Genomic Location: chr11:11246816...11259081
NR annotation: XP_031557599.1, U1 small nuclear ribonucleoprotein 70 kDa-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene08552.t1

AAGAGAATGGAGTCTTGTCTTCATTGATGATTTTTACCCACAAAATTCACACTTTTGGCTAATTTATAAAGCTAAAATCATGACTCAATATCTGCCTTCGAATCTGTTAGCTTTATTCGCGCCTAGAGACCCTCTTCCGTACTTAACACCACTCGACAAACCAACATGGCTCCGAAAGAAACCATGGCTCTACATTGGTGTTTCAACGTTTCTTCACATATTTGAGGACCCTAAAGATACTCCGCCACCCACCAGAGCTGAGACAAGAGAAGAAAAGTTTGAGAGAAAGAAAAGGGAAAAAGATGAACGTATTACAAATATGCTTGAAGAAAAACTAAAAGAATACAACCCTCAAACTGACCCTAATACTGAAGGTGATGCTTTCAGAACGCTGTTTGTGGGAAGAATTAATTACGATACCTCCGAGTCGAAACTCAGACGAGAAATGGAAATTTATGGACCAATAAACACTATCAACATGGTAATCGACAGCAACACCTCCAAACCACGCGGCTATGCCTTCATTGAATATGAACATGAACGAGACATGCATGCTGCCTACAAGCATGCTGATGGGAAAAAGATTGATGGAAGAAGAATTGTAGTAGACGTTGAGAGAGGAAGGACAGTCAAGACATGGAGGCCGCGAAGGCTTGGCGGTGGTCTTGGCGGTACACGTGTTGGTGGTCCAGAACAGAACGTAAAGCACTCAGGTCGTGTGGACAATGCAGAACGATATGAAGACAGGGAGCAACGTGACAAAGATCGCGACCGAGATCGTGAGAAGCGTGAACGTGAAAGGAAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCAAGATCGTAACCCAGATCGTAACCCAGATCGTAACCAAGAGCGTAACCAAGAGCGTCCTGAACGAAGGGAGCGTGAACGTTTTAAGCCGGAGCGTGACAACAGAGAACAGCGTGTTGATAGGCGTCAAAAACGCAGCAGGTCTCGTGACAAGGAGCGTGATAGGGGGGACCGTGGCAGAGAAAAACGGCGTGACCGCGGAGATCGTGAGCGCGGAGATCGTGACCGTGGAGAGCGTGAACGCGGAGATCGTGACCGTGGAGAGCGTGACGGCGAACGCGGAGATCGTGACCGTGGAGAGCGTGAACGCGGAGATCGTGACCGTGGAGAGCGTGACGGTGAACACGGAGAGCGTGAAGGTGAACACGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGGGAGCGTGACGGTGAACGCGGGGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACGGTGAACGCGGAGAGCGTGACCGTGGAGAGCGTGACGGTGAACGCGGAGATCGTGACCGTGGAGAGCGTGACGGTGAACGCGGAGATCGTGACCGTGGAGAGCGTGACCTTGAACGCGGAGATCGTGACCGTGGAGAGCGTGACATTGAACGCGGAGATGACCGAAAAGACAGAGATAGAGAAGAGCGTGACCGAGAATATCGTGACAGGGAAGACCGTGGCAACAATCGTGACTACGAGCGTGACGGGCCAAAAGCAGAACCAGGAGAGTACGGTGAATACCCTAACAACAACTCAATGCATAACAACACTGCAGACTTGGATATGGTGGACTAG

Protein

Uniprot

Uniprot term	Description
P08621	U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2
Q1RMR2	U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 SV=1
Q62376	U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12220	U1snRNP70_N	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal	Family	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR022023	Domain	U1 small nuclear ribonucleoprotein of 70kDa N-terminal	Interproscan
IPR051183	Family	U1 snRNP 70 kDa and U11/U12 snRNP 35 kDa	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034143	Domain	snRNP70, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0030619	Molecular Function	U1 snRNA binding	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11093	SNRP70; U1 small nuclear ribonucleoprotein 70kDa	-	Spliceosome	ko03041	deepkoala