Gene detail

Detailed information of gene06477.t1 in Actinoscyphia liui

Genomic Location: chr2:34152880...34160416
NR annotation: XP_020909653.1, T-box transcription factor TBX20 isoform X1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene06477.t1

CTGCAATGTGATTATAAACTGCCCCTCATTCGCAAGGTTACGCCGGAGAAGACAATTTTCAACTTTTCATCATCGATCATATTTGTACTTCACTTCAACACGATAAGTGATCACGAAGTGAAAAATGAGATCCCATTCCTCCCATGTGAATTCACAGTAGTTTTTATTTCATTCACGCAACTTGGTTAACGTTTAAAGTTACTATCAACAAACAAGAACGCTTTAAGCAGTTGACTTATGCAACTCATTAACCAATTAAAAAGTTGGAAGCGCACTTTTCTTTCCATCTTGTTGTGTTTTGCCTGCATCGCATTGACCAGACGGTGGTGGTGTATGTGACTTGAGCATCCTGTACGCTTGACACGAGAGAAGAAAGACTTAAGCCAGACTTACTGGTGACAGTCAAGTCATCTTTAGACACCTTGTACAATTGGATAATGCCGATGGATAACTCGGGTGGTTTTCTATCTGCCAGAGCTAACGCTTTCTCCATCGCGCAACTGATTGACGGTTCACATTGCATTGACTTCCCAGCAGACATGAGGCAAAGCTCTGGGACCTACACAAATCAGTGGAGCACACAGCAGTTTCACCAAGAAATGGAAGGGACAGGAAAGAGATTGCCATCACGATCTGACTCGTTATCTGAATCAGACGAAGACACTGTAGATCCATCACCATGTTACATGACAAGCCAGCCTTCAACCAACCGTGTTGCTCATGCTAGATCTCCTTGCGCCGAGTCCTCGTCTTCTTCGAGAAACGCCGCAGGAAGAAACCTTGCTCACGTTAACATTGAACTTGAAATGAAGAGCCTTTGGGACGAGTTTCACTCTCTTGGTACCGAGATGATTGTCACAAAAGCTGGACGGCGAATGTTTCCTACATTTCAAGTTCGTATGTCCAGTCTAGACCCAGCTGCTCGCTATGTCCTAATGATGGACTTCGTACCGGTGGACGACAAGCGATACCGCTACGCCTTTCACAGCTCCAAGTGGTTAGTGGCGGGAAAAGCCGATCCTAGTGTTCCTGGACGCGTGCACATCCACCCTGATTCACCGTGTACTGGTGCCCAATGGATGAAACAAATTGTGTCTTTTGACAAACTCAAATTGACTAACAACCTAATGGATGATAATGGGCATATTATCCTTAACTCGATGCATAATTACCAACCTCGTTTTCACATCATTCTGGAAGACCCAGAAAGGAATGATGCAGCATCTATAAACGAAGTCTCCAAGGACCGAATACGTACATTTGTATTTCAAGAAACACAATTTATGGCCGTCACAGCTTATCAAAACCACATGATTACCCAACTAAAAATCGCAAGCAATCCTTTTGCAAAAGGATTCCGAGACTGTGATCCTGAGGACTGTGTTATAGAAGTAATGAAACAGTTGGATCAGAACGCGTCATTAAACAGTTACATGCGACCACGACACACGAGGGAAACCACAGATTCACGACCAGACATTCCACCTGCAGTAGCAGCAGCAGCCATGGCATCTACCAGTATACCCCACCCTGTCTCACCATCCATGGCGCAGTACTCCATGGCGTTACAAGAAAGTTATCAAGGAGCCTATGAAAGCCGAGCTGCTGCTTTAAACCAAATGAGTCGTGGGATCCCTGTGGGTACGCCTCCAGCATGTAATTACCCGCCCATGATGGCACCCGTAGTTTCTCCTGTCGGTCTCCACTCACCTGTATCTCCTAATTCACCCACGAGCCCGCCTTATGGTCAGCGGACGTACCATGACGCACTACGCATGCACCGAATGGTACCTTATGCGCATCACAGCCTAAGACAGAGGTCTTCAGTGTCTTCATTATCCAGCGACGAACAAGGATCTGAATAACTGGACTTCAATTTGGACCGAAAAATAATTACAGGTGCCAACGTCCTCCACATGGTGCGTGGGAAGTGATGTTTATTCGATAAATGAATTCAAGAGACCATGAATTATGGTTCCTGGTTAATGCCCAGTTACATAACAAGAAGACCAGCTTTGTGAGCAAGACAGATAACAATTTTGGCTGAACAATTTTATTTGTCTTTTCTGAACTATGAAATCGCTTTCTTGAAAATAACTCATATTTGTACTTCTGTAAAACGACCATCTATGGCTGATCCAGTCAGTATAAGACACTTTGTAAAAAACATGTAAATCTATCATTGCAATTAAACGCCTTGACCAGGAAAGGCAATTCCTCAATTCGCCTTTCCCTCTATAACGTTTGATACCATAACTACCACAATCCTTTTCGAAATTTCTTTTCATATTCAAATGTTAAAATTCCTTTGAGACAACAGTGAAAACTAGCATAACAAAGGAAGATACCGAAAAGGATTATGGTAGTTATGCTATCAAACGTTATAGAGGGAAAAGCGAATTCAACTTTCAAATTACGGTATGCATTTTTGATAATAAATTATTAAAACTCATCAAATATGGAGGCACCTTATTACTACCCTGGGTTCCAGAGGTTGTCTCGCGTTACGCTTTGTTAATAATTAGACGGAGTTAGAACTTACTTACAAAGCGTAACGCGAGACAACCTCTGGAATCCAGGGTACCTTATTACATGAAATTGGCCGTTTTTATCTTGGACGACGAAAATTTCGACCAAGACGTAATTTTCGTCTGAGACGAAATTTTCAACAAGATAAATGCAGAAAATGGACGAAGTTTGCGTCAGACAAAAGTTTGAAATTGTGCGTCGTTTGGACGCACAAAACAGTCGAAATTTTAATTTGCGACAAGATACAAGCGAGATGCTTAAAATCGATGAAATTTTACGACCACAGGATATCCAAATTCCCGTCTTTGTATCCTCGCACTTGCACACTTCTACTTTATGCGTCTCGTATTTATTCTGTCGAAATTTAGCAAGACGGAAATTACGTCAAGATAAAAACGGCCATTATCTCGTGCTTTCAAAAATATCGTGAAATCGAAGTGATTAGAAAATTGAGTAGCAACTAAAAAATGTCGAAATTATAGGAATTTTCATTAAAAATTACGAAAATTTAATTTAAC

Protein

Uniprot

Uniprot term	Description
Q8AX98	T-box transcription factor TBX1-A OS=Xenopus laevis OX=8355 GN=tbx1-a PE=1 SV=1
O43435	T-box transcription factor TBX1 OS=Homo sapiens OX=9606 GN=TBX1 PE=1 SV=1
Q8AXX2	T-box transcription factor TBX1 OS=Danio rerio OX=7955 GN=tbx1 PE=2 SV=1

Gene family

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10175	TBX1; T-box protein 1	-	Transcription factors	ko03000	deepkoala