Gene detail

Detailed information of gene05958.t1 in Actinoscyphia liui

Genomic Location: chr2:28884010...28886282
NR annotation: XP_020895040.1, vesicular inhibitory amino acid transporter-like [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gene05958.t1

AGCCTCCGTACCGTTTGGGGCCTGAGTGACTATCAAATTCCATCAGTTTGGTCCATCAGTTTGGTCCGAGGAACTACATAGAAACGAAACATGAGTGATGTCTGTAAAAGACGCTAGTTTAATTTGGATTTAGCCATCAAAGTTGTCAAGAGAGGATTTATAATTTCGAGCCTATGGAATGTGTATCTCAATGGGATAGATGGTACGCTAACCGCAAAGGGTCGTCAGTATACCTTCTTGTCAGTTTTAATCAAACCAGAAGAAACTAACATAGACGCGTAACTCTTCTGGCAGGTGTCAAACCGTGTCTGGTTGTCCAGCCGAGCCACCAAAGAATTAAGAGTTGACTATCAATCAAATTTTAACCTGCCTTTTACCTGTTAGGGGTCATAGTCACAAGTGCATCGATTCTCAGGCTAGCAAAATGACTGTACAGTGCCATTCATACAGGGTGCTGATTTGAAATTCATTGGAAAATTTAGAAGAACACAATATTATGGCGAATGCCGAGAGCAACATAGAGTACACGTTACTTGAAAACAAATACGTAGAACAAGAAAACGGCAGACTTGCAGATGATGATGAGAGTGGATCAGCCGTGGAACCAGAGAAGGAACCAGGAGATCACCTTACATCTTCGTGTGAGACGTTCTGGAATATCTGTAACACAATCCAAGGACTACCAATACTGGCAATCCCATACGCGGTGAGGAACGGAGGGTACGTAGCACTTGTCGTCCTGTTGATTATTGCGGCTACTTCAAACTACACGGCGCAAATAATCGTACGATGTTTGTATGACAGGAACTCCGCCGGCAAGGCAAAAAGAAAGAGGATCAGGAAATCTTTTGTAGAAATTGGTCATGCATTCAATCCACGATTTGGAGGCCACGTCGTTCTGATTACCGAGATTTTACAGCTATTGTTCATATCAGCTGTTTATCCCAGAATGGTGGGCAGGATGCTGAAGCACTCGTTCCCTGAAGTCAACATTTCGTACTGGCTTTGGACGGTAGTTGGAGGAATAGCATTCATACCAAATGTCTTCCTCAAAAACCTTTCTCAGGTCGCATGGACAAGTATCATCACTGTCGTCTCAGCAAAAGTCATTTTTGTGACTGTTTTTACATACAGTGTAATGCAGTATGAGAAATGGGAACTAGCGTCGCTGGAAAACTTTGATATCCATACATTCCCAGCCGCTCTAGGGATTCTTGTTGCGAGCTATCTATCGCAGCCATTTGTGCCGGTCATCGAGGGGAGCATGCGCAGAAAGGAGAAGTTCAACATGCTGATGAATTTAGCATACTCATTGATGACTCTTCTCAATGTTGTCATAGGGTTTGTAGCGTTCATATCATTCCAGCCACACACTGCTGAAGTCGTTACGAATAATCTTCCAGAAGGATCATTTCGAACCACGATCAACATCATGGCAGCACTTCTGGCTTTCACGTCATATACACTTCCCATGTTCACCATCTTTGATGTTATCCACACTGCACACTTGCCATGTTTGCACGTCGATTTTGGCAAAACGTTTGCAAATGCCAATGCGCTGGCGCTCAAGATAATTTTAGTCTCAATTAGCGTGTTAATGGCGGCTCTGCTTCCGCGCTTTGCATATCTGCTAGCGTTTATTGGCAGTGCGTGTGGCCTAAGTCTAGAATTCATTTTCCCGCCATTATTTCACTCTAAATTGTACTTTGACGATTTAAAATGGTGGGAAATAAGTTTAAATATTCTAGTTTTATCTGTTGGAACATTCTTTTTATTATCAGGGATATTTTTTTCGGGAAAGTCTTTGTTATTTAAAGAAACTCTTTATATCAATGCAATGAATGGGACTACTCCGTTCACACCTACAACTAAACATGTTTAGTTAAACAGTGTTTAATTTTTTTTTTATATTTTGAACTCTGCTGCAGCAATTTTGTGTTTAGCTACACAGAATTACATCTACCTAACACAGGTTGTTCAGTTACACGTGGTTTAGAGCCAGCTACTATGAAACGTGATTAAATAGGATTTTAAACTGGTTTAGTTAAACAACTTTTAAACACGTTTAGTTGCAGGTGTGTGAATGGGGTATTAAGATAAGCTATCAGTAAAGCAGAAAGACTGTTTTCAGCCAATAACGAAAACATGCAAAATATAGAATCATTATTTTGAAAGTAAAGAAAATTATTTTATGTTTTTAAATAAAACAAATGTTTTTTCTTTACCCCCAAGATGCATTCACTTGTCCAGGGGCCAGTTAATAGTGGATAGCG

Protein

Uniprot

Uniprot term	Description
Q1PER9	Amino acid transporter AVT1G OS=Arabidopsis thaliana OX=3702 GN=AVT1G PE=2 SV=1
F4JE35	Amino acid transporter AVT1B OS=Arabidopsis thaliana OX=3702 GN=AVT1B PE=3 SV=2
F4IZW8	Amino acid transporter AVT1F OS=Arabidopsis thaliana OX=3702 GN=AVT1F PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057	Domain	Amino acid transporter, transmembrane domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22950	AMINO ACID TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003333	Biological Process	amino acid transmembrane transport	Interproscan
GO:0005774	Cellular Component	vacuolar membrane	Interproscan
GO:0015179	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15015	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)	-	Transporters	ko02000	deepkoala