Detailed information of gene05848.t1 in Actinoscyphia liui

Genomic Location: chr2:27587916...27589538
NR annotation: XP_020901982.1, probable ATP-dependent RNA helicase DDX41 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7SBC6ATP-dependent RNA helicase dbp2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2
Q9UJV9Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
G0SFM2ATP-dependent RNA helicase DBP2 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=DBP2 PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13116DDX41, ABS; ATP-dependent RNA helicase DDX41EC:5.6.2.7
Spliceosomeko03041deepkoala

TOP