Gene detail

Detailed information of gene05736.t1 in Actinoscyphia liui

Genomic Location: chr2:26350012...26355630
NR annotation: XP_020917735.1, DNA-directed RNA polymerase I subunit RPA49 isoform X3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q9GZS1	DNA-directed RNA polymerase I subunit RPA49 OS=Homo sapiens OX=9606 GN=POLR1E PE=1 SV=3
Q6GLI9	DNA-directed RNA polymerase I subunit RPA49 OS=Xenopus laevis OX=8355 GN=polr1e PE=2 SV=1
Q8K202	DNA-directed RNA polymerase I subunit RPA49 OS=Mus musculus OX=10090 GN=Polr1e PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06870	RNA_pol_I_A49	A49-like RNA polymerase I associated factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009668	Family	RNA polymerase I associated factor, A49-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14440	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001188	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005736	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0006362	Biological Process	transcription elongation by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03005	RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49	-	Transcription machinery	ko03021	deepkoala