Gene detail

Detailed information of gene05593.t1 in Actinoscyphia liui Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
gene05593.t1	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3	chr2	24362554	24369978	+

Gene Structure

More details in Jbrowse Sequence

CDS

gene05593.t1

ATGAGTGACGACCTAAATAATGGCGCTCTTCGCTTGGCTGTGGCCCAGATCTGTCAGTCAATGGGTTGGGATGCGTTAAACAAGTCAACTCATGATTTACTGACCGAAGTGCTGCAAAAGTACATGGTGGAAATAGCCAAATGTGCTCACGACTACTCGCAACTTTACTGCCACACGGAACCAAGCCTGGATGATTTAGGATTGGCCTTTAAACATACAGGGGTGGTTCTCCATGAACTAGAGGATTTTGTGAGCCAGGTAGACCAAGTACCATTTAATTATCAGTTGCCACAGTTTCCATTGCCAAAGCCTAACCTGCTTCAGCACCCTCGTACAGACGTCATTAGTGATCGGCCTGAGTTCTATCATGAGCACTTGCCACCCCTCATCAAAGCTTTACAACAAAATGAAGATGAAAGAGAAGGAAGCAAAGATGAATCCCAAGGGATAGAAGACCCTTCATCTCAGTTTCTCAGAAATGAAATTAAAACAGTTGGTAAAGAAACTGAAAATGAAAGCATTGAAAACACACCCCAAAAAAGGGCACTCACCATCAAGTCTCCAGAACTCGAAACTGATGTCAAGAGAAGAAGATTGGAAGGACCCTTTGGGAAACACACCAATGAAAAGAAACTCGATATTTTACAAGTTCTTCAAGAGAAAAATAACTCCATTTCACTCTCGCCATCTCCTTCACCAGATTTTATACCCACGGAAACCAAAAACAAAGCAAAATCTATTTTTACTTTTTCAAGTACATCTACTCCTGCGCCGGCAATTCCACCTACAAGTAGTATTACTCCTAAGAAGGGAACAACAAAAAAGGAAAAAGCAAGTAAAGAGAAAAAACTGCTGTCGCCCCCTAGTAGTCAGACATTATTAGTACAGAAGCAGCCTAAACTTGAAGCGAGTCCAACTACAGAAAAGAAATCAGATAAATCTAAAAACAAACGCACAGACTCACCTAGTAATACAAAGAAAAGCAGCTCACCAGTAAAACTGTCTAGCCCTCCAACCACTCAAAAAGCACTACAGCAACCGTTTTCTAAGCCAAAAACTCCTAAAAAGACCAAAGTAAAGAAGGAGAACCAGTCCACTCCAACGGTCCCTAATGAGCCACCAGTATTTGCAAAAATAACATTTAGTCCACCACCAAGTAAAAAATGGCGTGATGAGGATTCAAGCCCACAAGCTACTCCTATGCCAAAACTGATTATAAAACCAATGAAACTTGAAAAGAATATACATTCAGAGTATTCTGTATCGTCAGTTCCACCTGATGACAGTTTGGGATTAGAAAAGAAAAAATCCAAGACAAAAGTAACACCAGGTACTTCATCGACTACAGATGAGACAAAGCCAAAGAAGAAAAAGAAAAAGAAGGGCATTGACATTAAAATTTTGGGAAGCCCTCCGACTGAACAAGCAATGACAATACATGTTCCTTCAAGTGAAGTTAAACTTCCAGATATTCCAACTCGTGTATTTAATGATCCTGCTCCAGCCGTGGAAAAAGGAGGGGAGATTGTCAAAAAGAAGAAAAAAAAACATAAAGAGAAAGATAGAGACAAAAGTAAACCTAAAAAGGTGAAAGAACCGAGTAGTGAGCCGTCAATTCCTATCCCAACATTAAAACTGAAATTAGAGAATACACCAACAACTACCATATCCAGCAGCCAGGCAATTCCTACAACTAAGATAAGTGCTGCTAAGTCCAGCGAACCCACAGTAACTGTGATACCTAAAGAAGAAATGTCAAGAACTCTTATACCTAAAAAGGAAAGAACTGTTATCACAGAAACACTTTCTACTACTGTGCAAATCTATTATTGTCCAGCCTGTCGTTTAGCTGATGATGGCAGCTTTATGATTGGTTGTGATACATGTGACAGTTGGTATCATGGAGGTTGTGTTGGTATTGCCAATGACCCTGGTGGTAACTGGTACTGTGAGGTCTGTATGGCCAAGAAAGCCAAGAAGAAGAAAAAGAAGAAAAAAGCTAAGGCTAACCAATCGTAA

Transcript

gene05593.t1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF07524	Bromo_TP	Bromodomain associated	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR006565	Domain	Bromodomain associated domain	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46452	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002039	Molecular Function	p53 binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-