Detailed information of gene05573.t1 in Actinoscyphia liui

Genomic Location: chr2:24077273...24081768
NR annotation: XP_020915010.1, alkylated DNA repair protein alkB homolog 8 [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q07G10tRNA (carboxymethyluridine(34)-5-O)-methyltransferase alkbh8 OS=Xenopus tropicalis OX=8364 GN=alkbh8 PE=2 SV=2
Q95K79tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8 OS=Macaca fascicularis OX=9541 GN=ALKBH8 PE=2 SV=1
Q80Y20tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8 OS=Mus musculus OX=10090 GN=Alkbh8 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF135322OG-FeII_Oxy_22OG-Fe(II) oxygenase superfamilyDomainInterproscan
PF08241Methyltransf_11Methyltransferase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR027450DomainAlpha-ketoglutarate-dependent dioxygenase AlkB-likeInterproscan
IPR037151Homologous_superfamilyAlpha-ketoglutarate-dependent dioxygenase AlkB-like superfamilyInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034256DomainALKBH8, RNA recognition motifInterproscan
IPR005123DomainOxoglutarate/iron-dependent dioxygenaseInterproscan
IPR051422FamilyAlkB Family tRNA Methyltransferase/DioxygenaseInterproscan
IPR013216DomainMethyltransferase type 11Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13069UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:0106335Molecular FunctiontRNA (5-carboxymethyluridine(34)-5-O)-methyltransferase activityInterproscan
GO:0008757Molecular FunctionS-adenosylmethionine-dependent methyltransferase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10770ALKBH8, TRM9; alkylated DNA repair protein alkB homolog 8EC:1.14.11.-
EC:2.1.1.229
Transfer RNA biogenesisko03016deepkoala

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