Detailed information of gene03234.t1 in Actinoscyphia liui

Genomic Location: chr1:49317745...49332753
NR annotation: XP_020897403.1, tRNA:m(4)X modification enzyme TRM13 homolog [Exaiptasia diaphana]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8BYH3tRNA:m(4)X modification enzyme TRM13 homolog OS=Mus musculus OX=10090 GN=Trmt13 PE=2 SV=1
Q9NUP7tRNA:m(4)X modification enzyme TRM13 homolog OS=Homo sapiens OX=9606 GN=TRMT13 PE=1 SV=2
Q12383tRNA:m(4)X modification enzyme TRM13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRM13 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11722zf-TRM13_CCCHCCCH zinc finger in TRM13 proteinDomainInterproscan
PF05253zf-U11-48KU11-48K-like CHHC zinc fingerDomainInterproscan
PF05206TRM13Methyltransferase TRM13FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR021721DomainZinc finger, CCCH-type, TRM13Interproscan
IPR039044FamilytRNA:m(4)X modification enzyme Trm13Interproscan
IPR022776DomainTRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainInterproscan
IPR007871DomainMethyltransferase TRM13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12998UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0008175Molecular FunctiontRNA methyltransferase activityInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:0106050Molecular FunctiontRNA 2'-O-methyltransferase activityInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15446TRM13, CCDC76; tRNA:m4X modification enzymeEC:2.1.1.225
Transfer RNA biogenesisko03016deepkoala

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